Analysis of interatomic Contacts of Structural Units in PDB entry:
6SDM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SDM entry

There are 4 chains in PDB entry 6SDM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -1	ALA 352
B	HIS -1	ALA 352
C	HIS -1	ALA 352
D	HIS -1	PRO 275

There are 58 helices in PDB entry 6SDM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	46	Right-handed alpha
Helix 2	AA2	A	92	97	Right-handed alpha
Helix 3	AA3	A	99	103	Right-handed 310
Helix 4	AA4	A	128	133	Right-handed alpha
Helix 5	AA5	A	141	146	Right-handed alpha
Helix 6	AA6	A	150	162	Right-handed alpha
Helix 7	AA7	A	176	189	Right-handed alpha
Helix 8	AA8	A	203	211	Right-handed alpha
Helix 9	AA9	A	219	221	Right-handed 310
Helix 10	AB1	A	222	231	Right-handed alpha
Helix 11	AB2	A	246	255	Right-handed alpha
Helix 12	AB3	A	297	311	Right-handed alpha
Helix 13	AB4	A	315	318	Right-handed 310
Helix 14	AB5	A	328	339	Right-handed alpha
Helix 15	AB6	B	37	47	Right-handed alpha
Helix 16	AB7	B	92	97	Right-handed alpha
Helix 17	AB8	B	99	103	Right-handed 310
Helix 18	AB9	B	128	133	Right-handed alpha
Helix 19	AC1	B	141	146	Right-handed alpha
Helix 20	AC2	B	150	162	Right-handed alpha
Helix 21	AC3	B	176	189	Right-handed alpha
Helix 22	AC4	B	203	210	Right-handed alpha
Helix 23	AC5	B	219	221	Right-handed 310
Helix 24	AC6	B	222	231	Right-handed alpha
Helix 25	AC7	B	246	255	Right-handed alpha
Helix 26	AC8	B	281	285	Right-handed 310
Helix 27	AC9	B	297	311	Right-handed alpha
Helix 28	AD1	B	315	318	Right-handed 310
Helix 29	AD2	B	328	338	Right-handed alpha
Helix 30	AD3	C	37	45	Right-handed alpha
Helix 31	AD4	C	92	97	Right-handed alpha
Helix 32	AD5	C	99	103	Right-handed 310
Helix 33	AD6	C	128	133	Right-handed alpha
Helix 34	AD7	C	141	146	Right-handed alpha
Helix 35	AD8	C	150	162	Right-handed alpha
Helix 36	AD9	C	176	189	Right-handed alpha
Helix 37	AE1	C	203	210	Right-handed alpha
Helix 38	AE2	C	219	221	Right-handed 310
Helix 39	AE3	C	222	231	Right-handed alpha
Helix 40	AE4	C	247	255	Right-handed alpha
Helix 41	AE5	C	297	311	Right-handed alpha
Helix 42	AE6	C	315	320	Right-handed 310
Helix 43	AE7	C	328	337	Right-handed alpha
Helix 44	AE8	D	37	46	Right-handed alpha
Helix 45	AE9	D	92	98	Right-handed alpha
Helix 46	AF1	D	99	103	Right-handed 310
Helix 47	AF2	D	128	133	Right-handed alpha
Helix 48	AF3	D	141	146	Right-handed alpha
Helix 49	AF4	D	150	162	Right-handed alpha
Helix 50	AF5	D	176	189	Right-handed alpha
Helix 51	AF6	D	203	210	Right-handed alpha
Helix 52	AF7	D	219	221	Right-handed 310
Helix 53	AF8	D	222	231	Right-handed alpha
Helix 54	AF9	D	247	255	Right-handed alpha
Helix 55	AG1	D	279	282	Right-handed 310
Helix 56	AG2	D	297	311	Right-handed alpha
Helix 57	AG3	D	315	318	Right-handed 310
Helix 58	AG4	D	328	339	Right-handed alpha

There are 18 sheets in PDB entry 6SDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	17	first strand
Strand 2	A	1	8	anti-parallel
Strand 3	A	55	56	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	A	27	35	anti-parallel
Strand 3	A	60	68	anti-parallel
Strand 4	A	80	83	anti-parallel
Strand 5	A	134	135	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	A	27	35	anti-parallel
Strand 3	A	346	350	anti-parallel
Strand 4	A	320	325	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	217	first strand
Strand 2	A	194	198	parallel
Strand 3	A	170	173	parallel
Strand 4	A	236	241	parallel
Strand 5	A	256	264	parallel
Strand 6	A	289	292	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	277	first strand
Strand 2	B	273	277	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	18	first strand
Strand 2	B	0	8	anti-parallel
Strand 3	B	55	56	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	27	35	anti-parallel
Strand 3	B	60	68	anti-parallel
Strand 4	B	80	83	anti-parallel
Strand 5	B	134	135	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	27	35	anti-parallel
Strand 3	B	346	350	anti-parallel
Strand 4	B	320	325	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	217	first strand
Strand 2	B	194	198	parallel
Strand 3	B	170	173	parallel
Strand 4	B	236	241	parallel
Strand 5	B	256	264	parallel
Strand 6	B	289	292	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	18	first strand
Strand 2	C	0	8	anti-parallel
Strand 3	C	55	56	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	126	first strand
Strand 2	C	27	35	anti-parallel
Strand 3	C	60	68	anti-parallel
Strand 4	C	80	83	anti-parallel
Strand 5	C	134	135	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	126	first strand
Strand 2	C	27	35	anti-parallel
Strand 3	C	347	350	anti-parallel
Strand 4	C	322	325	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	217	first strand
Strand 2	C	194	198	parallel
Strand 3	C	170	173	parallel
Strand 4	C	236	241	parallel
Strand 5	C	256	264	parallel
Strand 6	C	289	292	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	277	first strand
Strand 2	D	273	277	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	18	first strand
Strand 2	D	0	8	anti-parallel
Strand 3	D	55	56	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	126	first strand
Strand 2	D	27	35	anti-parallel
Strand 3	D	60	68	anti-parallel
Strand 4	D	80	83	anti-parallel
Strand 5	D	134	135	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	126	first strand
Strand 2	D	27	35	anti-parallel
Strand 3	D	346	350	anti-parallel
Strand 4	D	320	325	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	217	first strand
Strand 2	D	194	198	parallel
Strand 3	D	170	173	parallel
Strand 4	D	236	241	parallel
Strand 5	D	256	264	parallel
Strand 6	D	289	292	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SDM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SDM