Analysis of interatomic Contacts of Structural Units in PDB entry:
6SDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SDV entry

There are 2 chains in PDB entry 6SDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 36	PRO 1009
B	GLY 2	ALA 215

There are 57 helices in PDB entry 6SDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	68	Right-handed 310
Helix 2	AA2	A	88	93	Right-handed alpha
Helix 3	AA3	A	93	99	Right-handed alpha
Helix 4	AA4	A	121	141	Right-handed alpha
Helix 5	AA5	A	166	180	Right-handed alpha
Helix 6	AA6	A	188	193	Right-handed alpha
Helix 7	AA7	A	195	205	Right-handed alpha
Helix 8	AA8	A	212	219	Right-handed 310
Helix 9	AA9	A	228	233	Right-handed alpha
Helix 10	AB1	A	235	246	Right-handed alpha
Helix 11	AB2	A	258	263	Right-handed alpha
Helix 12	AB3	A	274	289	Right-handed alpha
Helix 13	AB4	A	293	301	Right-handed alpha
Helix 14	AB5	A	302	305	Right-handed 310
Helix 15	AB6	A	330	334	Right-handed 310
Helix 16	AB7	A	354	364	Right-handed alpha
Helix 17	AB8	A	367	376	Right-handed alpha
Helix 18	AB9	A	378	391	Right-handed alpha
Helix 19	AC1	A	392	394	Right-handed 310
Helix 20	AC2	A	412	427	Right-handed alpha
Helix 21	AC3	A	445	452	Right-handed alpha
Helix 22	AC4	A	459	463	Right-handed 310
Helix 23	AC5	A	472	479	Right-handed alpha
Helix 24	AC6	A	490	493	Right-handed 310
Helix 25	AC7	A	494	507	Right-handed alpha
Helix 26	AC8	A	511	516	Right-handed alpha
Helix 27	AC9	A	517	519	Right-handed 310
Helix 28	AD1	A	527	531	Right-handed 310
Helix 29	AD2	A	532	542	Right-handed alpha
Helix 30	AD3	A	554	559	Right-handed alpha
Helix 31	AD4	A	561	570	Right-handed alpha
Helix 32	AD5	A	587	591	Right-handed 310
Helix 33	AD6	A	595	599	Right-handed 310
Helix 34	AD7	A	610	614	Right-handed 310
Helix 35	AD8	A	640	660	Right-handed alpha
Helix 36	AD9	A	664	669	Right-handed alpha
Helix 37	AE1	A	672	674	Right-handed 310
Helix 38	AE2	A	682	692	Right-handed alpha
Helix 39	AE3	A	713	717	Right-handed 310
Helix 40	AE4	A	727	731	Right-handed 310
Helix 41	AE5	A	741	743	Right-handed 310
Helix 42	AE6	A	749	756	Right-handed alpha
Helix 43	AE7	A	773	778	Right-handed 310
Helix 44	AE8	A	786	790	Right-handed 310
Helix 45	AE9	A	894	897	Right-handed 310
Helix 46	AF1	A	898	905	Right-handed alpha
Helix 47	AF2	A	913	921	Right-handed alpha
Helix 48	AF3	A	977	981	Right-handed 310
Helix 49	AF4	B	10	12	Right-handed 310
Helix 50	AF5	B	16	27	Right-handed alpha
Helix 51	AF6	B	80	90	Right-handed alpha
Helix 52	AF7	B	107	112	Right-handed 310
Helix 53	AF8	B	113	121	Right-handed alpha
Helix 54	AF9	B	141	147	Right-handed alpha
Helix 55	AG1	B	151	157	Right-handed alpha
Helix 56	AG2	B	167	182	Right-handed alpha
Helix 57	AG3	B	205	210	Right-handed alpha

There are 18 sheets in PDB entry 6SDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	49	first strand
Strand 2	A	58	63	anti-parallel
Strand 3	A	71	76	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	108	110	anti-parallel
Strand 3	A	602	607	anti-parallel
Strand 4	A	574	579	parallel
Strand 5	A	547	551	parallel
Strand 6	A	157	160	parallel
Strand 7	A	185	186	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	150	153	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	268	first strand
Strand 2	A	249	253	parallel
Strand 3	A	221	225	parallel
Strand 4	A	399	403	parallel
Strand 5	A	437	439	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	317	318	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	327	328	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	619	first strand
Strand 2	A	624	628	anti-parallel
Strand 3	A	763	764	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	676	677	first strand
Strand 2	A	680	681	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	694	first strand
Strand 2	A	723	724	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	700	first strand
Strand 2	A	703	705	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	735	first strand
Strand 2	A	738	739	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	795	first strand
Strand 2	A	798	801	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	883	first strand
Strand 2	A	959	963	parallel
Strand 3	A	909	912	anti-parallel
Strand 4	A	935	943	parallel
Strand 5	A	927	932	anti-parallel
Strand 6	A	998	1004	anti-parallel
Strand 7	A	878	883	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	950	952	first strand
Strand 2	A	955	957	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	3	8	anti-parallel
Strand 3	B	198	202	parallel
Strand 4	B	189	190	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	58	first strand
Strand 2	B	66	72	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	103	105	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	135	136	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SDV