Analysis of interatomic Contacts of Structural Units in PDB entry:
6SDZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SDZ entry

There are 11 chains in PDB entry 6SDZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	THR 123
B	PRO 11	THR 123
C	PRO 11	THR 123
D	PRO 11	THR 123
E	PRO 11	THR 123
F	PRO 11	THR 123
G	PRO 11	THR 123
H	PRO 11	THR 123
I	PRO 11	THR 123
J	PRO 11	THR 123
K	PRO 11	THR 123

There are no helices in PDB entry 6SDZ

There are 12 sheets in PDB entry 6SDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	B	13	16	parallel
Strand 3	C	13	16	parallel
Strand 4	D	13	16	parallel
Strand 5	E	13	16	parallel
Strand 6	F	13	16	parallel
Strand 7	G	13	16	parallel
Strand 8	H	13	16	parallel
Strand 9	I	13	16	parallel
Strand 10	J	13	16	parallel
Strand 11	K	13	16	parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	B	19	21	parallel
Strand 3	C	19	21	parallel
Strand 4	D	19	21	parallel
Strand 5	E	19	21	parallel
Strand 6	F	19	21	parallel
Strand 7	G	19	21	parallel
Strand 8	H	19	21	parallel
Strand 9	I	19	21	parallel
Strand 10	J	19	21	parallel
Strand 11	K	19	21	parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	34	first strand
Strand 2	B	25	34	parallel
Strand 3	C	25	34	parallel
Strand 4	D	25	34	parallel
Strand 5	E	25	34	parallel
Strand 6	F	25	34	parallel
Strand 7	G	25	34	parallel
Strand 8	H	25	34	parallel
Strand 9	I	25	34	parallel
Strand 10	J	25	34	parallel
Strand 11	K	25	34	parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	B	59	62	parallel
Strand 3	C	59	62	parallel
Strand 4	D	59	62	parallel
Strand 5	E	59	62	parallel
Strand 6	F	59	62	parallel
Strand 7	G	59	62	parallel
Strand 8	H	59	62	parallel
Strand 9	I	59	62	parallel
Strand 10	J	59	62	parallel
Strand 11	K	59	62	parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	B	65	66	parallel
Strand 3	C	65	66	parallel
Strand 4	D	65	66	parallel
Strand 5	E	65	66	parallel
Strand 6	F	65	66	parallel
Strand 7	G	65	66	parallel
Strand 8	H	65	66	parallel
Strand 9	I	65	66	parallel
Strand 10	J	65	66	parallel
Strand 11	K	65	66	parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	B	71	73	parallel
Strand 3	C	71	73	parallel
Strand 4	D	71	73	parallel
Strand 5	E	71	73	parallel
Strand 6	F	71	73	parallel
Strand 7	G	71	73	parallel
Strand 8	H	71	73	parallel
Strand 9	I	71	73	parallel
Strand 10	J	71	73	parallel
Strand 11	K	71	73	parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	B	76	80	parallel
Strand 3	C	76	80	parallel
Strand 4	D	76	80	parallel
Strand 5	E	76	80	parallel
Strand 6	F	76	80	parallel
Strand 7	G	76	80	parallel
Strand 8	H	76	80	parallel
Strand 9	I	76	80	parallel
Strand 10	J	76	80	parallel
Strand 11	K	76	80	parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	98	first strand
Strand 2	B	92	98	parallel
Strand 3	C	92	98	parallel
Strand 4	D	92	98	parallel
Strand 5	E	92	98	parallel
Strand 6	F	92	98	parallel
Strand 7	G	92	98	parallel
Strand 8	H	92	98	parallel
Strand 9	I	92	98	parallel
Strand 10	J	92	98	parallel
Strand 11	K	92	98	parallel

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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	B	103	104	parallel
Strand 3	C	103	104	parallel
Strand 4	D	103	104	parallel
Strand 5	E	103	104	parallel
Strand 6	F	103	104	parallel
Strand 7	G	103	104	parallel
Strand 8	H	103	104	parallel
Strand 9	I	103	104	parallel
Strand 10	J	103	104	parallel
Strand 11	K	103	104	parallel

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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	B	114	115	parallel
Strand 3	C	114	115	parallel
Strand 4	D	114	115	parallel
Strand 5	E	114	115	parallel
Strand 6	F	114	115	parallel
Strand 7	G	114	115	parallel
Strand 8	H	114	115	parallel
Strand 9	I	114	115	parallel
Strand 10	J	114	115	parallel
Strand 11	K	114	115	parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	122	first strand
Strand 2	B	118	122	parallel
Strand 3	C	118	122	parallel
Strand 4	D	118	122	parallel
Strand 5	E	118	122	parallel
Strand 6	F	118	122	parallel
Strand 7	G	118	122	parallel
Strand 8	H	118	122	parallel
Strand 9	I	118	122	parallel
Strand 10	J	118	122	parallel
Strand 11	K	118	122	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	83	84	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SDZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SDZ