Analysis of interatomic Contacts of Structural Units in PDB entry:
6SE1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SE1 entry

There is 1 chain in PDB entry 6SE1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 380LYS 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6SE1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
387 392Right-handed alpha
Helix 2
AA2
A
393 399Right-handed alpha
Helix 3
AA3
A
407 414Right-handed alpha
Helix 4
AA4
A
429 434Right-handed alpha
Helix 5
AA5
A
435 447Right-handed alpha
Helix 6
AA6
A
474 490Right-handed alpha
Helix 7
AA7
A
508 527Right-handed alpha
Helix 8
AA8
A
544 557Right-handed alpha
Helix 9
AA9
A
570 583Right-handed alpha
Helix 10
AB1
A
584 587Right-handed 310
Helix 11
AB2
A
592 597Right-handed alpha
Helix 12
AB3
A
610 614Right-handed 310
Helix 13
AB4
A
623 635Right-handed alpha
Helix 14
AB5
A
636 638Right-handed 310
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There are 2 sheets in PDB entry 6SE1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 456first strand
Strand 2
A
423 428parallel
Strand 3
A
493 497parallel
Strand 4
A
531 535parallel
Strand 5
A
589 591parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 564first strand
Strand 2
A
602 604anti-parallel
Strand 3
A
598 599anti-parallel
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