Analysis of interatomic Contacts of Structural Units in PDB entry:
6SED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SED entry

There is 1 chain in PDB entry 6SED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 22SER 1010
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6SED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 36Right-handed alpha
Helix 2
AA2
A
71 75Right-handed 310
Helix 3
AA3
A
79 83Right-handed 310
Helix 4
AA4
A
97 102Right-handed 310
Helix 5
AA5
A
138 142Right-handed 310
Helix 6
AA6
A
198 204Right-handed 310
Helix 7
AA7
A
264 267Right-handed 310
Helix 8
AA8
A
345 358Right-handed alpha
Helix 9
AA9
A
374 383Right-handed alpha
Helix 10
AB1
A
394 401Right-handed 310
Helix 11
AB2
A
405 411Right-handed 310
Helix 12
AB3
A
412 428Right-handed alpha
Helix 13
AB4
A
445 459Right-handed alpha
Helix 14
AB5
A
484 493Right-handed alpha
Helix 15
AB6
A
501 510Right-handed alpha
Helix 16
AB7
A
528 539Right-handed alpha
Helix 17
AB8
A
578 583Right-handed 310
Helix 18
AB9
A
594 604Right-handed alpha
Helix 19
AC1
A
666 676Right-handed alpha
Helix 20
AC2
A
766 770Right-handed 310
Helix 21
AC3
A
780 789Right-handed alpha
Helix 22
AC4
A
904 908Right-handed alpha
Helix 23
AC5
A
950 957Right-handed alpha
Helix 24
AC6
A
959 963Right-handed 310
Helix 25
AC7
A
990 994Right-handed 310
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There are 15 sheets in PDB entry 6SED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
302 307anti-parallel
Strand 3
A
292 297anti-parallel
Strand 4
A
260 263anti-parallel
Strand 5
A
268 271anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
145 149anti-parallel
Strand 4
A
175 178anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
62 69anti-parallel
Strand 3
A
128 137anti-parallel
Strand 4
A
186 195anti-parallel
Strand 5
A
155 160anti-parallel
Strand 6
A
163 168anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
208 210anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
213 214anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 238first strand
Strand 2
A
243 252anti-parallel
Strand 3
A
255 256anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 238first strand
Strand 2
A
243 252anti-parallel
Strand 3
A
276 278anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 315first strand
Strand 2
A
318 321anti-parallel
Strand 3
A
324 325anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
433 437parallel
Strand 3
A
385 389parallel
Strand 4
A
363 365parallel
Strand 5
A
328 332parallel
Strand 6
A
542 547parallel
Strand 7
A
513 518parallel
Strand 8
A
478 481parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 558first strand
Strand 2
A
564 567anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 611first strand
Strand 2
A
617 622anti-parallel
Strand 3
A
660 664anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 650first strand
Strand 2
A
632 640anti-parallel
Strand 3
A
682 690anti-parallel
Strand 4
A
702 710anti-parallel
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There are 13 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 726first strand
Strand 2
A
730 733anti-parallel
Strand 3
A
736 739anti-parallel
Strand 4
A
745 748anti-parallel
Strand 5
A
751 759anti-parallel
Strand 6
A
863 870anti-parallel
Strand 7
A
969 977anti-parallel
Strand 8
A
933 947anti-parallel
Strand 9
A
1000 1009anti-parallel
Strand 10
A
840 849anti-parallel
Strand 11
A
826 835anti-parallel
Strand 12
A
810 820anti-parallel
Strand 13
A
793 804anti-parallel
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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 726first strand
Strand 2
A
730 733anti-parallel
Strand 3
A
736 739anti-parallel
Strand 4
A
745 748anti-parallel
Strand 5
A
751 759anti-parallel
Strand 6
A
863 870anti-parallel
Strand 7
A
969 977anti-parallel
Strand 8
A
933 947anti-parallel
Strand 9
A
920 930anti-parallel
Strand 10
A
876 883anti-parallel
Strand 11
A
896 903anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
853 854first strand
Strand 2
A
857 858anti-parallel
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