Analysis of interatomic Contacts of Structural Units in PDB entry:
6SEH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SEH entry

There are 4 chains in PDB entry 6SEH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLN 4ARG 312
D
 PRO 844ARG 925
A
 GLN 4LYS 311
B
 VAL 849ARG 925
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6SEH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
33 42Right-handed alpha
Helix 2
AA2
C
54 58Right-handed 310
Helix 3
AA3
C
71 84Right-handed alpha
Helix 4
AA4
C
85 88Right-handed 310
Helix 5
AA5
C
115 127Right-handed alpha
Helix 6
AA6
C
143 156Right-handed alpha
Helix 7
AA7
C
198 203Right-handed 310
Helix 8
AA8
C
207 209Right-handed 310
Helix 9
AA9
C
210 223Right-handed alpha
Helix 10
AB1
C
257 265Right-handed alpha
Helix 11
AB2
C
289 301Right-handed alpha
Helix 12
AB3
C
302 311Right-handed alpha
Helix 13
AB4
D
847 862Right-handed alpha
Helix 14
AB5
D
872 879Right-handed alpha
Helix 15
AB6
D
885 893Right-handed alpha
Helix 16
AB7
D
895 900Right-handed alpha
Helix 17
AB8
D
907 918Right-handed alpha
Helix 18
AB9
A
33 42Right-handed alpha
Helix 19
AC1
A
71 84Right-handed alpha
Helix 20
AC2
A
115 127Right-handed alpha
Helix 21
AC3
A
143 157Right-handed alpha
Helix 22
AC4
A
198 202Right-handed 310
Helix 23
AC5
A
207 209Right-handed 310
Helix 24
AC6
A
210 223Right-handed alpha
Helix 25
AC7
A
257 265Right-handed alpha
Helix 26
AC8
A
289 302Right-handed alpha
Helix 27
AC9
A
302 311Right-handed alpha
Helix 28
AD1
B
851 860Right-handed alpha
Helix 29
AD2
B
872 879Right-handed alpha
Helix 30
AD3
B
885 893Right-handed alpha
Helix 31
AD4
B
895 900Right-handed alpha
Helix 32
AD5
B
907 919Right-handed alpha
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There are 8 sheets in PDB entry 6SEH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 31first strand
Strand 2
C
13 19anti-parallel
Strand 3
C
60 67anti-parallel
Strand 4
C
138 141anti-parallel
Strand 5
C
166 169parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
243 245first strand
Strand 2
C
254 256anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
277 279first strand
Strand 2
C
286 288anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
883 884first strand
Strand 2
D
922 923parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
13 19anti-parallel
Strand 3
A
60 67anti-parallel
Strand 4
A
138 141anti-parallel
Strand 5
A
166 169parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 245first strand
Strand 2
A
254 256anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
286 288anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
883 884first strand
Strand 2
B
922 923parallel
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