Analysis of interatomic Contacts of Structural Units in PDB entry:
6SEO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SEO entry

There are 3 chains in PDB entry 6SEO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 216GLU 343
A
 VAL 345LYS 433
L
 VAL 220PRO 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6SEO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
268 274Right-handed 310
Helix 2
AA2
A
280 288Right-handed alpha
Helix 3
AA3
A
289 291Right-handed 310
Helix 4
AA4
A
367 380Right-handed alpha
Helix 5
AA5
A
382 390Right-handed alpha
Helix 6
AA6
L
221 225Right-handed 310
Helix 7
AA7
L
228 232Right-handed 310
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There are 3 sheets in PDB entry 6SEO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
225 236anti-parallel
Strand 3
A
242 250anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
225 236anti-parallel
Strand 3
A
312 322anti-parallel
Strand 4
A
356 365anti-parallel
Strand 5
A
351 353anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 266first strand
Strand 2
A
425 432parallel
Strand 3
A
293 300anti-parallel
Strand 4
A
407 417parallel
Strand 5
A
393 401anti-parallel
Strand 6
A
327 336anti-parallel
Strand 7
A
339 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il