Analysis of interatomic Contacts of Structural Units in PDB entry:
6SEQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SEQ entry

There is 1 chain in PDB entry 6SEQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 159SER 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6SEQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
200 216Right-handed alpha
Helix 2
AA2
A
246 253Right-handed alpha
Helix 3
AA3
A
267 289Right-handed alpha
Helix 4
AA4
A
297 299Right-handed 310
Helix 5
AA5
A
316 321Right-handed alpha
Helix 6
AA6
A
322 325Right-handed 310
Helix 7
AA7
A
335 339Right-handed 310
Helix 8
AA8
A
340 344Right-handed 310
Helix 9
AA9
A
357 374Right-handed alpha
Helix 10
AB1
A
384 392Right-handed alpha
Helix 11
AB2
A
409 420Right-handed alpha
Helix 12
AB3
A
421 422Right-handed 310
Helix 13
AB4
A
423 427Right-handed 310
Helix 14
AB5
A
429 442Right-handed alpha
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There are 3 sheets in PDB entry 6SEQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 171first strand
Strand 2
A
174 181anti-parallel
Strand 3
A
188 194anti-parallel
Strand 4
A
236 240anti-parallel
Strand 5
A
225 229anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
309 311anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
333 334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il