Analysis of interatomic Contacts of Structural Units in PDB entry:
6SER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SER entry

There is 1 chain in PDB entry 6SER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 15SER 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6SER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 39Right-handed alpha
Helix 2
AA2
A
78 88Right-handed alpha
Helix 3
AA3
A
88 96Right-handed alpha
Helix 4
AA4
A
196 228Right-handed alpha
Helix 5
AA5
A
238 242Right-handed 310
Helix 6
AA6
A
248 252Right-handed 310
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There are 2 sheets in PDB entry 6SER. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 49first strand
Strand 2
A
52 57anti-parallel
Strand 3
A
68 74anti-parallel
Strand 4
A
181 190anti-parallel
Strand 5
A
165 175anti-parallel
Strand 6
A
142 151anti-parallel
Strand 7
A
127 139anti-parallel
Strand 8
A
161 163parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 109first strand
Strand 2
A
112 119anti-parallel
Strand 3
A
127 139anti-parallel
Strand 4
A
142 151anti-parallel
Strand 5
A
253 254anti-parallel
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