Analysis of interatomic Contacts of Structural Units in PDB entry:
6SF2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SF2 entry

There are 6 chains in PDB entry 6SF2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 30GLU 104
B
 SER 325ARG 429
C
 GLU 84ASP 260
D
 PRO 30THR 106
E
 SER 325ARG 429
F
 GLU 84HIS 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6SF2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 79Right-handed alpha
Helix 2
AA2
B
340 343Right-handed 310
Helix 3
AA3
B
371 384Right-handed alpha
Helix 4
AA4
C
86 100Right-handed alpha
Helix 5
AA5
C
207 212Right-handed alpha
Helix 6
AA6
D
74 79Right-handed alpha
Helix 7
AA7
E
340 343Right-handed 310
Helix 8
AA8
E
371 384Right-handed alpha
Helix 9
AA9
F
86 98Right-handed alpha
Helix 10
AB1
F
207 216Right-handed alpha
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There are 12 sheets in PDB entry 6SF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
45 48anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 70first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
85 90anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 330first strand
Strand 2
B
355 357anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
Strand 2
B
350 352anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 347first strand
Strand 2
B
393 406anti-parallel
Strand 3
B
412 428anti-parallel
Strand 4
C
108 112anti-parallel
Strand 5
C
254 259anti-parallel
Strand 6
C
144 149anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 35first strand
Strand 2
D
45 48anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 70first strand
Strand 2
D
50 56anti-parallel
Strand 3
D
85 90anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
328 330first strand
Strand 2
E
355 357anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
333 335first strand
Strand 2
E
350 352anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
345 347first strand
Strand 2
E
393 406anti-parallel
Strand 3
E
412 428anti-parallel
Strand 4
F
108 113anti-parallel
Strand 5
F
253 259anti-parallel
Strand 6
F
144 155anti-parallel
Strand 7
F
201 206anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
345 347first strand
Strand 2
E
393 406anti-parallel
Strand 3
E
412 428anti-parallel
Strand 4
F
108 113anti-parallel
Strand 5
F
253 259anti-parallel
Strand 6
F
144 155anti-parallel
Strand 7
F
241 242anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
116 120first strand
Strand 2
F
129 134anti-parallel
Strand 3
F
225 232anti-parallel
Strand 4
F
168 174anti-parallel
Strand 5
F
191 197anti-parallel
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