Analysis of interatomic Contacts of Structural Units in PDB entry:
6SF7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SF7 entry

There are 4 chains in PDB entry 6SF7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	LYS 203
B	GLU 1	LYS 203
C	ASN 2	LYS 203
D	ASN 2	LYS 203

There are 18 helices in PDB entry 6SF7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	16	Right-handed 310
Helix 2	AA2	A	37	43	Right-handed alpha
Helix 3	AA3	A	95	100	Right-handed 310
Helix 4	AA4	A	152	156	Right-handed 310
Helix 5	AA5	A	190	200	Right-handed alpha
Helix 6	AA6	B	14	16	Right-handed 310
Helix 7	AA7	B	37	42	Right-handed alpha
Helix 8	AA8	B	95	99	Right-handed 310
Helix 9	AA9	B	152	156	Right-handed 310
Helix 10	AB1	B	190	199	Right-handed alpha
Helix 11	AB2	C	14	16	Right-handed 310
Helix 12	AB3	C	37	42	Right-handed alpha
Helix 13	AB4	C	95	99	Right-handed 310
Helix 14	AB5	C	190	200	Right-handed alpha
Helix 15	AB6	D	14	16	Right-handed 310
Helix 16	AB7	D	37	42	Right-handed alpha
Helix 17	AB8	D	95	99	Right-handed 310
Helix 18	AB9	D	190	199	Right-handed alpha

There are 9 sheets in PDB entry 6SF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	131	141	anti-parallel
Strand 3	A	144	147	anti-parallel
Strand 4	A	184	188	anti-parallel
Strand 5	A	167	174	anti-parallel
Strand 6	A	159	161	anti-parallel
Strand 7	A	114	119	anti-parallel
Strand 8	A	131	141	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	25	28	anti-parallel
Strand 3	A	33	36	anti-parallel
Strand 4	A	80	84	anti-parallel
Strand 5	A	64	72	anti-parallel
Strand 6	A	49	52	anti-parallel
Strand 7	A	18	20	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	127	128	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	130	141	anti-parallel
Strand 3	B	144	147	anti-parallel
Strand 4	B	184	188	anti-parallel
Strand 5	B	167	174	anti-parallel
Strand 6	B	159	162	anti-parallel
Strand 7	B	114	119	anti-parallel
Strand 8	B	130	141	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	25	28	anti-parallel
Strand 3	B	33	36	anti-parallel
Strand 4	B	80	84	anti-parallel
Strand 5	B	63	72	anti-parallel
Strand 6	B	49	52	anti-parallel
Strand 7	B	18	20	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	131	141	anti-parallel
Strand 3	C	144	151	anti-parallel
Strand 4	C	182	188	anti-parallel
Strand 5	C	167	174	anti-parallel
Strand 6	C	159	161	anti-parallel
Strand 7	C	114	119	anti-parallel
Strand 8	C	131	141	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	25	28	anti-parallel
Strand 3	C	33	36	anti-parallel
Strand 4	C	80	84	anti-parallel
Strand 5	C	64	72	anti-parallel
Strand 6	C	49	52	anti-parallel
Strand 7	C	18	20	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	131	141	anti-parallel
Strand 3	D	144	150	anti-parallel
Strand 4	D	183	188	anti-parallel
Strand 5	D	167	172	anti-parallel
Strand 6	D	159	161	anti-parallel
Strand 7	D	114	119	anti-parallel
Strand 8	D	131	141	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	25	28	anti-parallel
Strand 3	D	33	36	anti-parallel
Strand 4	D	80	84	anti-parallel
Strand 5	D	64	72	anti-parallel
Strand 6	D	49	52	anti-parallel
Strand 7	D	18	20	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SF7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SF7