Analysis of interatomic Contacts of Structural Units in PDB entry:
6SFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SFH entry

There are 2 chains in PDB entry 6SFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2TYR 238
B
 THR 2TYR 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 6SFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 27Right-handed alpha
Helix 2
AA2
A
28 31Right-handed 310
Helix 3
AA3
A
45 57Right-handed alpha
Helix 4
AA4
A
71 75Right-handed 310
Helix 5
AA5
A
81 93Right-handed alpha
Helix 6
AA6
A
110 124Right-handed alpha
Helix 7
AA7
A
140 153Right-handed alpha
Helix 8
AA8
A
167 185Right-handed alpha
Helix 9
AA9
A
195 197Right-handed 310
Helix 10
AB1
A
198 204Right-handed alpha
Helix 11
AB2
A
205 209Right-handed 310
Helix 12
AB3
A
227 238Right-handed alpha
Helix 13
AB4
B
17 27Right-handed alpha
Helix 14
AB5
B
28 31Right-handed 310
Helix 15
AB6
B
45 56Right-handed alpha
Helix 16
AB7
B
57 62Right-handed 310
Helix 17
AB8
B
71 75Right-handed 310
Helix 18
AB9
B
81 93Right-handed alpha
Helix 19
AC1
B
110 124Right-handed alpha
Helix 20
AC2
B
140 153Right-handed alpha
Helix 21
AC3
B
167 185Right-handed alpha
Helix 22
AC4
B
195 197Right-handed 310
Helix 23
AC5
B
198 204Right-handed alpha
Helix 24
AC6
B
205 209Right-handed 310
Helix 25
AC7
B
227 238Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6SFH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 193first strand
Strand 2
A
158 163parallel
Strand 3
A
127 134parallel
Strand 4
A
100 104parallel
Strand 5
A
64 68parallel
Strand 6
A
33 37parallel
Strand 7
A
5 10parallel
Strand 8
A
212 216parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 193first strand
Strand 2
B
158 163parallel
Strand 3
B
127 134parallel
Strand 4
B
100 104parallel
Strand 5
B
64 68parallel
Strand 6
B
33 37parallel
Strand 7
B
5 10parallel
Strand 8
B
212 216parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il