Analysis of interatomic Contacts of Structural Units in PDB entry:
6SFW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SFW entry

There are 6 chains in PDB entry 6SFW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
O	GLU 60	LEU 407
P	GLU 60	LEU 407
Q	GLU 60	LEU 407
R	GLU 60	LEU 407
S	GLU 60	LEU 407
T	GLU 60	LEU 407

There are112 helices in PDB entry 6SFW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	O	63	75	Right-handed alpha
Helix 2	AA2	O	78	99	Right-handed alpha
Helix 3	AA3	O	122	135	Right-handed alpha
Helix 4	AA4	O	143	147	Right-handed alpha
Helix 5	AA5	O	150	167	Right-handed alpha
Helix 6	AA6	O	170	176	Right-handed alpha
Helix 7	AA7	O	184	187	Right-handed 310
Helix 8	AA8	O	209	215	Right-handed alpha
Helix 9	AA9	O	237	241	Right-handed 310
Helix 10	AB1	O	250	260	Right-handed alpha
Helix 11	AB2	O	277	284	Right-handed alpha
Helix 12	AB3	O	285	293	Right-handed alpha
Helix 13	AB4	O	295	302	Right-handed alpha
Helix 14	AB5	O	312	322	Right-handed alpha
Helix 15	AB6	O	326	337	Right-handed alpha
Helix 16	AB7	O	345	360	Right-handed alpha
Helix 17	AB8	O	362	381	Right-handed alpha
Helix 18	AB9	O	382	384	Right-handed 310
Helix 19	AC1	O	392	399	Right-handed alpha
Helix 20	AC2	P	63	72	Right-handed alpha
Helix 21	AC3	P	78	98	Right-handed alpha
Helix 22	AC4	P	122	134	Right-handed alpha
Helix 23	AC5	P	143	147	Right-handed alpha
Helix 24	AC6	P	152	167	Right-handed alpha
Helix 25	AC7	P	170	177	Right-handed alpha
Helix 26	AC8	P	183	189	Right-handed alpha
Helix 27	AC9	P	203	215	Right-handed alpha
Helix 28	AD1	P	237	241	Right-handed 310
Helix 29	AD2	P	251	262	Right-handed alpha
Helix 30	AD3	P	268	273	Right-handed 310
Helix 31	AD4	P	276	282	Right-handed alpha
Helix 32	AD5	P	283	285	Right-handed 310
Helix 33	AD6	P	286	292	Right-handed alpha
Helix 34	AD7	P	295	300	Right-handed alpha
Helix 35	AD8	P	312	322	Right-handed alpha
Helix 36	AD9	P	326	338	Right-handed alpha
Helix 37	AE1	P	345	359	Right-handed alpha
Helix 38	AE2	P	363	381	Right-handed alpha
Helix 39	AE3	P	392	399	Right-handed alpha
Helix 40	AE4	Q	63	75	Right-handed alpha
Helix 41	AE5	Q	78	98	Right-handed alpha
Helix 42	AE6	Q	122	135	Right-handed alpha
Helix 43	AE7	Q	144	147	Right-handed 310
Helix 44	AE8	Q	151	167	Right-handed alpha
Helix 45	AE9	Q	170	176	Right-handed alpha
Helix 46	AF1	Q	183	188	Right-handed 310
Helix 47	AF2	Q	203	215	Right-handed alpha
Helix 48	AF3	Q	237	241	Right-handed 310
Helix 49	AF4	Q	251	259	Right-handed alpha
Helix 50	AF5	Q	278	283	Right-handed alpha
Helix 51	AF6	Q	285	291	Right-handed alpha
Helix 52	AF7	Q	295	301	Right-handed alpha
Helix 53	AF8	Q	312	322	Right-handed alpha
Helix 54	AF9	Q	326	337	Right-handed alpha
Helix 55	AG1	Q	345	359	Right-handed alpha
Helix 56	AG2	Q	362	381	Right-handed alpha
Helix 57	AG3	Q	392	399	Right-handed alpha
Helix 58	AG4	R	63	72	Right-handed alpha
Helix 59	AG5	R	78	98	Right-handed alpha
Helix 60	AG6	R	102	106	Right-handed 310
Helix 61	AG7	R	122	135	Right-handed alpha
Helix 62	AG8	R	144	146	Right-handed 310
Helix 63	AG9	R	157	167	Right-handed alpha
Helix 64	AH1	R	171	176	Right-handed alpha
Helix 65	AH2	R	183	187	Right-handed 310
Helix 66	AH3	R	203	214	Right-handed alpha
Helix 67	AH4	R	251	260	Right-handed alpha
Helix 68	AH5	R	261	264	Right-handed 310
Helix 69	AH6	R	271	277	Right-handed 310
Helix 70	AH7	R	278	283	Right-handed alpha
Helix 71	AH8	R	285	293	Right-handed alpha
Helix 72	AH9	R	295	301	Right-handed alpha
Helix 73	AI1	R	312	321	Right-handed alpha
Helix 74	AI2	R	326	338	Right-handed alpha
Helix 75	AI3	R	345	360	Right-handed alpha
Helix 76	AI4	R	363	381	Right-handed alpha
Helix 77	AI5	R	392	397	Right-handed alpha
Helix 78	AI6	S	63	75	Right-handed alpha
Helix 79	AI7	S	78	98	Right-handed alpha
Helix 80	AI8	S	102	106	Right-handed 310
Helix 81	AI9	S	122	135	Right-handed alpha
Helix 82	AJ1	S	152	155	Right-handed 310
Helix 83	AJ2	S	156	167	Right-handed alpha
Helix 84	AJ3	S	170	177	Right-handed alpha
Helix 85	AJ4	S	183	188	Right-handed 310
Helix 86	AJ5	S	204	214	Right-handed alpha
Helix 87	AJ6	S	252	262	Right-handed alpha
Helix 88	AJ7	S	277	282	Right-handed alpha
Helix 89	AJ8	S	285	293	Right-handed alpha
Helix 90	AJ9	S	295	302	Right-handed alpha
Helix 91	AK1	S	312	320	Right-handed alpha
Helix 92	AK2	S	326	337	Right-handed alpha
Helix 93	AK3	S	345	360	Right-handed alpha
Helix 94	AK4	S	362	381	Right-handed alpha
Helix 95	AK5	S	392	397	Right-handed alpha
Helix 96	AK6	T	63	75	Right-handed alpha
Helix 97	AK7	T	78	98	Right-handed alpha
Helix 98	AK8	T	122	135	Right-handed alpha
Helix 99	AK9	T	144	147	Right-handed 310
Helix 100	AL1	T	151	167	Right-handed alpha
Helix 101	AL2	T	170	176	Right-handed alpha
Helix 102	AL3	T	183	187	Right-handed 310
Helix 103	AL4	T	204	215	Right-handed alpha
Helix 104	AL5	T	251	260	Right-handed alpha
Helix 105	AL6	T	269	274	Right-handed 310
Helix 106	AL7	T	276	283	Right-handed alpha
Helix 107	AL8	T	285	292	Right-handed alpha
Helix 108	AL9	T	295	301	Right-handed alpha
Helix 109	AM1	T	312	322	Right-handed alpha
Helix 110	AM2	T	326	338	Right-handed alpha
Helix 111	AM3	T	345	360	Right-handed alpha
Helix 112	AM4	T	361	381	Right-handed alpha

There are 12 sheets in PDB entry 6SFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	138	142	first strand
Strand 2	O	178	182	parallel
Strand 3	O	242	247	parallel
Strand 4	O	113	116	parallel
Strand 5	O	304	307	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	341	344	first strand
Strand 2	O	388	391	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	138	142	first strand
Strand 2	P	178	182	parallel
Strand 3	P	242	247	parallel
Strand 4	P	113	116	parallel
Strand 5	P	304	307	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	341	344	first strand
Strand 2	P	388	391	parallel
Strand 3	P	404	406	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	138	142	first strand
Strand 2	Q	178	182	parallel
Strand 3	Q	242	247	parallel
Strand 4	Q	113	116	parallel
Strand 5	Q	304	307	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	341	344	first strand
Strand 2	Q	388	391	parallel
Strand 3	Q	404	406	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	138	142	first strand
Strand 2	R	178	182	parallel
Strand 3	R	242	247	parallel
Strand 4	R	113	116	parallel
Strand 5	R	304	307	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	341	344	first strand
Strand 2	R	388	391	parallel
Strand 3	R	404	406	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	138	142	first strand
Strand 2	S	178	182	parallel
Strand 3	S	242	246	parallel
Strand 4	S	113	116	parallel
Strand 5	S	304	307	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	341	344	first strand
Strand 2	S	388	391	parallel
Strand 3	S	404	406	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	138	142	first strand
Strand 2	T	178	182	parallel
Strand 3	T	242	247	parallel
Strand 4	T	113	116	parallel
Strand 5	T	304	307	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	341	344	first strand
Strand 2	T	388	391	parallel
Strand 3	T	404	406	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SFW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SFW