Analysis of interatomic Contacts of Structural Units in PDB entry:
6SG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SG8 entry

There are 2 chains in PDB entry 6SG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 157	LYS 582
B	PRO 156	LYS 582

There are 8 helices in PDB entry 6SG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	223	225	Right-handed 310
Helix 2	AA2	A	265	271	Right-handed alpha
Helix 3	AA3	A	329	337	Right-handed alpha
Helix 4	AA4	A	400	404	Right-handed 310
Helix 5	AA5	B	223	225	Right-handed 310
Helix 6	AA6	B	265	271	Right-handed alpha
Helix 7	AA7	B	330	338	Right-handed alpha
Helix 8	AA8	B	400	404	Right-handed 310

There are 14 sheets in PDB entry 6SG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	164	first strand
Strand 2	A	572	582	anti-parallel
Strand 3	A	556	565	anti-parallel
Strand 4	A	540	549	anti-parallel
Strand 5	A	483	484	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	189	first strand
Strand 2	A	192	201	anti-parallel
Strand 3	A	210	221	anti-parallel
Strand 4	A	227	236	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	250	first strand
Strand 2	A	254	260	anti-parallel
Strand 3	A	278	284	anti-parallel
Strand 4	A	289	291	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	308	first strand
Strand 2	A	319	328	anti-parallel
Strand 3	A	314	316	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	308	first strand
Strand 2	A	319	328	anti-parallel
Strand 3	A	376	386	anti-parallel
Strand 4	A	391	398	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	415	first strand
Strand 2	A	418	423	anti-parallel
Strand 3	A	433	442	anti-parallel
Strand 4	A	445	453	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	489	first strand
Strand 2	A	502	510	anti-parallel
Strand 3	A	515	523	anti-parallel
Strand 4	A	527	532	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	572	581	anti-parallel
Strand 3	B	555	565	anti-parallel
Strand 4	B	540	550	anti-parallel
Strand 5	B	483	484	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	189	first strand
Strand 2	B	192	201	anti-parallel
Strand 3	B	210	221	anti-parallel
Strand 4	B	227	236	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	250	first strand
Strand 2	B	254	260	anti-parallel
Strand 3	B	278	284	anti-parallel
Strand 4	B	289	291	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	308	first strand
Strand 2	B	319	329	anti-parallel
Strand 3	B	314	316	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	308	first strand
Strand 2	B	319	329	anti-parallel
Strand 3	B	375	387	anti-parallel
Strand 4	B	390	398	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	415	first strand
Strand 2	B	418	423	anti-parallel
Strand 3	B	433	442	anti-parallel
Strand 4	B	445	453	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	489	first strand
Strand 2	B	502	510	anti-parallel
Strand 3	B	515	522	anti-parallel
Strand 4	B	527	532	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SG8