Analysis of interatomic Contacts of Structural Units in PDB entry:
6SGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SGE entry

There are 4 chains in PDB entry 6SGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLN 180
B
 ALA 1ALA 126
C
 ALA 2TYR 183
D
 ALA 1GLN 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6SGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 28Right-handed alpha
Helix 2
AA2
A
63 73Right-handed 310
Helix 3
AA3
A
88 98Right-handed alpha
Helix 4
AA4
A
98 107Right-handed alpha
Helix 5
AA5
A
118 123Right-handed 310
Helix 6
AA6
A
124 134Right-handed alpha
Helix 7
AA7
A
140 152Right-handed alpha
Helix 8
AA8
A
166 180Right-handed alpha
Helix 9
AA9
B
88 92Right-handed 310
Helix 10
AB1
B
101 106Right-handed alpha
Helix 11
AB2
C
17 28Right-handed alpha
Helix 12
AB3
C
63 73Right-handed 310
Helix 13
AB4
C
88 98Right-handed alpha
Helix 14
AB5
C
98 107Right-handed alpha
Helix 15
AB6
C
118 123Right-handed 310
Helix 16
AB7
C
124 134Right-handed alpha
Helix 17
AB8
C
140 151Right-handed alpha
Helix 18
AB9
C
166 179Right-handed alpha
Helix 19
AC1
D
88 92Right-handed 310
Helix 20
AC2
D
101 106Right-handed alpha
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There are 6 sheets in PDB entry 6SGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 48first strand
Strand 2
A
51 60anti-parallel
Strand 3
A
4 12parallel
Strand 4
A
79 85parallel
Strand 5
A
112 117parallel
Strand 6
A
155 158parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
69 73anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
119 123parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
60 61anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 48first strand
Strand 2
C
51 60anti-parallel
Strand 3
C
4 12parallel
Strand 4
C
79 85parallel
Strand 5
C
112 117parallel
Strand 6
C
155 158parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
79 84anti-parallel
Strand 4
D
69 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
119 123parallel
Strand 3
D
93 99anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
46 51anti-parallel
Strand 6
D
60 61anti-parallel
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