Analysis of interatomic Contacts of Structural Units in PDB entry:
6SGS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SGS entry

There are 8 chains in PDB entry 6SGS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 1044
B	MET 1	PHE 1033
C	MET 1	PHE 1033
D	GLY 11	GLN 166
E	GLY 15	GLN 166
F	MET 1	SER 37
G	MET 1	PHE 36
H	MET 1	SER 37

There are139 helices in PDB entry 6SGS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	7	Right-handed alpha
Helix 2	AA2	A	8	30	Right-handed alpha
Helix 3	AA3	A	53	61	Right-handed alpha
Helix 4	AA4	A	61	67	Right-handed alpha
Helix 5	AA5	A	99	115	Right-handed alpha
Helix 6	AA6	A	116	118	Right-handed 310
Helix 7	AA7	A	119	126	Right-handed alpha
Helix 8	AA8	A	150	162	Right-handed alpha
Helix 9	AA9	A	162	167	Right-handed alpha
Helix 10	AB1	A	189	195	Right-handed alpha
Helix 11	AB2	A	199	211	Right-handed alpha
Helix 12	AB3	A	242	248	Right-handed alpha
Helix 13	AB4	A	298	311	Right-handed alpha
Helix 14	AB5	A	312	317	Right-handed 310
Helix 15	AB6	A	329	360	Right-handed alpha
Helix 16	AB7	A	361	386	Right-handed alpha
Helix 17	AB8	A	391	424	Right-handed alpha
Helix 18	AB9	A	426	454	Right-handed alpha
Helix 19	AC1	A	455	459	Right-handed 310
Helix 20	AC2	A	463	494	Right-handed alpha
Helix 21	AC3	A	505	509	Right-handed 310
Helix 22	AC4	A	511	535	Right-handed alpha
Helix 23	AC5	A	537	558	Right-handed alpha
Helix 24	AC6	A	583	601	Right-handed alpha
Helix 25	AC7	A	643	656	Right-handed alpha
Helix 26	AC8	A	691	707	Right-handed alpha
Helix 27	AC9	A	732	740	Right-handed alpha
Helix 28	AD1	A	742	755	Right-handed alpha
Helix 29	AD2	A	777	780	Right-handed 310
Helix 30	AD3	A	783	788	Right-handed 310
Helix 31	AD4	A	801	804	Right-handed alpha
Helix 32	AD5	A	836	850	Right-handed alpha
Helix 33	AD6	A	861	866	Right-handed alpha
Helix 34	AD7	A	872	893	Right-handed alpha
Helix 35	AD8	A	896	903	Right-handed alpha
Helix 36	AD9	A	904	920	Right-handed alpha
Helix 37	AE1	A	924	955	Right-handed alpha
Helix 38	AE2	A	959	971	Right-handed alpha
Helix 39	AE3	A	972	991	Right-handed alpha
Helix 40	AE4	A	996	1033	Right-handed alpha
Helix 41	AE5	B	2	6	Right-handed alpha
Helix 42	AE6	B	8	30	Right-handed alpha
Helix 43	AE7	B	53	61	Right-handed alpha
Helix 44	AE8	B	61	68	Right-handed alpha
Helix 45	AE9	B	101	115	Right-handed alpha
Helix 46	AF1	B	116	118	Right-handed 310
Helix 47	AF2	B	119	126	Right-handed alpha
Helix 48	AF3	B	150	162	Right-handed alpha
Helix 49	AF4	B	162	169	Right-handed alpha
Helix 50	AF5	B	189	196	Right-handed alpha
Helix 51	AF6	B	199	210	Right-handed alpha
Helix 52	AF7	B	242	248	Right-handed alpha
Helix 53	AF8	B	262	265	Right-handed alpha
Helix 54	AF9	B	298	314	Right-handed alpha
Helix 55	AG1	B	315	317	Right-handed 310
Helix 56	AG2	B	329	359	Right-handed alpha
Helix 57	AG3	B	361	387	Right-handed alpha
Helix 58	AG4	B	391	423	Right-handed alpha
Helix 59	AG5	B	426	458	Right-handed alpha
Helix 60	AG6	B	461	496	Right-handed alpha
Helix 61	AG7	B	511	535	Right-handed alpha
Helix 62	AG8	B	538	558	Right-handed alpha
Helix 63	AG9	B	583	602	Right-handed alpha
Helix 64	AH1	B	639	642	Right-handed 310
Helix 65	AH2	B	643	657	Right-handed alpha
Helix 66	AH3	B	691	708	Right-handed alpha
Helix 67	AH4	B	732	739	Right-handed alpha
Helix 68	AH5	B	742	755	Right-handed alpha
Helix 69	AH6	B	776	780	Right-handed 310
Helix 70	AH7	B	782	788	Right-handed 310
Helix 71	AH8	B	836	849	Right-handed alpha
Helix 72	AH9	B	861	869	Right-handed alpha
Helix 73	AI1	B	872	893	Right-handed alpha
Helix 74	AI2	B	896	903	Right-handed alpha
Helix 75	AI3	B	904	919	Right-handed alpha
Helix 76	AI4	B	924	957	Right-handed alpha
Helix 77	AI5	B	959	991	Right-handed alpha
Helix 78	AI6	B	996	1033	Right-handed alpha
Helix 79	AI7	C	2	6	Right-handed alpha
Helix 80	AI8	C	8	28	Right-handed alpha
Helix 81	AI9	C	53	61	Right-handed alpha
Helix 82	AJ1	C	61	67	Right-handed alpha
Helix 83	AJ2	C	99	112	Right-handed alpha
Helix 84	AJ3	C	114	118	Right-handed 310
Helix 85	AJ4	C	119	124	Right-handed alpha
Helix 86	AJ5	C	150	162	Right-handed alpha
Helix 87	AJ6	C	162	169	Right-handed alpha
Helix 88	AJ7	C	189	196	Right-handed alpha
Helix 89	AJ8	C	199	211	Right-handed alpha
Helix 90	AJ9	C	242	248	Right-handed alpha
Helix 91	AK1	C	262	266	Right-handed alpha
Helix 92	AK2	C	298	312	Right-handed alpha
Helix 93	AK3	C	313	317	Right-handed 310
Helix 94	AK4	C	329	359	Right-handed alpha
Helix 95	AK5	C	361	386	Right-handed alpha
Helix 96	AK6	C	391	424	Right-handed alpha
Helix 97	AK7	C	426	452	Right-handed alpha
Helix 98	AK8	C	461	494	Right-handed alpha
Helix 99	AK9	C	511	536	Right-handed alpha
Helix 100	AL1	C	538	558	Right-handed alpha
Helix 101	AL2	C	583	601	Right-handed alpha
Helix 102	AL3	C	633	637	Right-handed 310
Helix 103	AL4	C	643	656	Right-handed alpha
Helix 104	AL5	C	671	675	Right-handed 310
Helix 105	AL6	C	691	707	Right-handed alpha
Helix 106	AL7	C	732	739	Right-handed alpha
Helix 107	AL8	C	742	755	Right-handed alpha
Helix 108	AL9	C	777	780	Right-handed 310
Helix 109	AM1	C	836	848	Right-handed alpha
Helix 110	AM2	C	861	893	Right-handed alpha
Helix 111	AM3	C	895	902	Right-handed alpha
Helix 112	AM4	C	905	919	Right-handed alpha
Helix 113	AM5	C	924	956	Right-handed alpha
Helix 114	AM6	C	959	992	Right-handed alpha
Helix 115	AM7	C	998	1017	Right-handed alpha
Helix 116	AM8	C	1017	1033	Right-handed alpha
Helix 117	AM9	D	12	25	Right-handed alpha
Helix 118	AN1	D	26	36	Right-handed alpha
Helix 119	AN2	D	49	57	Right-handed alpha
Helix 120	AN3	D	59	69	Right-handed alpha
Helix 121	AN4	D	82	90	Right-handed alpha
Helix 122	AN5	D	92	102	Right-handed alpha
Helix 123	AN6	D	115	123	Right-handed alpha
Helix 124	AN7	D	125	135	Right-handed alpha
Helix 125	AN8	D	148	157	Right-handed alpha
Helix 126	AN9	D	158	165	Right-handed alpha
Helix 127	AO1	E	16	25	Right-handed alpha
Helix 128	AO2	E	26	36	Right-handed alpha
Helix 129	AO3	E	49	58	Right-handed alpha
Helix 130	AO4	E	59	69	Right-handed alpha
Helix 131	AO5	E	82	91	Right-handed alpha
Helix 132	AO6	E	92	102	Right-handed alpha
Helix 133	AO7	E	115	123	Right-handed alpha
Helix 134	AO8	E	125	135	Right-handed alpha
Helix 135	AO9	E	148	157	Right-handed alpha
Helix 136	AP1	E	160	166	Right-handed alpha
Helix 137	AP2	F	2	36	Right-handed alpha
Helix 138	AP3	G	2	35	Right-handed alpha
Helix 139	AP4	H	2	37	Right-handed alpha

There are 24 sheets in PDB entry 6SGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	47	anti-parallel
Strand 3	A	88	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	823	831	anti-parallel
Strand 7	A	713	719	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	47	anti-parallel
Strand 3	A	88	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	823	831	anti-parallel
Strand 7	A	679	686	anti-parallel
Strand 8	A	855	859	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	284	291	anti-parallel
Strand 3	A	138	144	anti-parallel
Strand 4	A	321	328	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	284	291	anti-parallel
Strand 3	A	278	281	anti-parallel
Strand 4	A	606	613	anti-parallel
Strand 5	A	624	631	anti-parallel
Strand 6	A	571	577	anti-parallel
Strand 7	A	662	666	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	767	775	parallel
Strand 4	A	757	764	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	B	724	731	parallel
Strand 4	B	805	812	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	259	260	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	812	first strand
Strand 2	A	724	731	anti-parallel
Strand 3	C	232	235	parallel
Strand 4	C	218	219	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	792	first strand
Strand 2	A	798	800	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	815	819	anti-parallel
Strand 6	B	822	831	anti-parallel
Strand 7	B	713	718	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	815	819	anti-parallel
Strand 6	B	822	831	anti-parallel
Strand 7	B	679	686	anti-parallel
Strand 8	B	855	859	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	178	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	138	144	anti-parallel
Strand 4	B	321	328	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	178	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	278	281	anti-parallel
Strand 4	B	606	613	anti-parallel
Strand 5	B	624	631	anti-parallel
Strand 6	B	571	577	anti-parallel
Strand 7	B	662	667	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	271	first strand
Strand 2	B	183	188	anti-parallel
Strand 3	B	768	774	parallel
Strand 4	B	757	763	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	C	724	731	parallel
Strand 4	C	805	812	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	259	261	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	792	first strand
Strand 2	B	798	800	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	42	47	anti-parallel
Strand 3	C	88	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	815	819	anti-parallel
Strand 6	C	822	831	anti-parallel
Strand 7	C	713	718	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	42	47	anti-parallel
Strand 3	C	88	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	815	819	anti-parallel
Strand 6	C	822	831	anti-parallel
Strand 7	C	680	686	anti-parallel
Strand 8	C	855	860	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	138	144	anti-parallel
Strand 4	C	321	328	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	278	281	anti-parallel
Strand 4	C	606	616	anti-parallel
Strand 5	C	619	631	anti-parallel
Strand 6	C	571	577	anti-parallel
Strand 7	C	662	666	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	767	775	parallel
Strand 4	C	757	764	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	259	261	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	790	792	first strand
Strand 2	C	798	800	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SGS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SGS