Analysis of interatomic Contacts of Structural Units in PDB entry:
6SGU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SGU entry

There are 5 chains in PDB entry 6SGU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 1033
B	MET 1	PHE 1033
C	MET 1	PHE 1033
D	GLY 11	GLN 166
E	GLY 15	GLN 166

There are150 helices in PDB entry 6SGU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	7	Right-handed alpha
Helix 2	AA2	A	8	28	Right-handed alpha
Helix 3	AA3	A	53	61	Right-handed alpha
Helix 4	AA4	A	61	67	Right-handed alpha
Helix 5	AA5	A	99	112	Right-handed alpha
Helix 6	AA6	A	114	118	Right-handed 310
Helix 7	AA7	A	119	124	Right-handed alpha
Helix 8	AA8	A	150	162	Right-handed alpha
Helix 9	AA9	A	163	168	Right-handed alpha
Helix 10	AB1	A	189	194	Right-handed alpha
Helix 11	AB2	A	199	211	Right-handed alpha
Helix 12	AB3	A	243	248	Right-handed alpha
Helix 13	AB4	A	298	312	Right-handed alpha
Helix 14	AB5	A	313	317	Right-handed 310
Helix 15	AB6	A	329	334	Right-handed alpha
Helix 16	AB7	A	337	359	Right-handed alpha
Helix 17	AB8	A	361	366	Right-handed alpha
Helix 18	AB9	A	367	372	Right-handed alpha
Helix 19	AC1	A	379	386	Right-handed alpha
Helix 20	AC2	A	391	422	Right-handed alpha
Helix 21	AC3	A	426	454	Right-handed alpha
Helix 22	AC4	A	455	457	Right-handed 310
Helix 23	AC5	A	463	488	Right-handed alpha
Helix 24	AC6	A	488	496	Right-handed alpha
Helix 25	AC7	A	504	509	Right-handed 310
Helix 26	AC8	A	510	538	Right-handed alpha
Helix 27	AC9	A	539	558	Right-handed alpha
Helix 28	AD1	A	583	601	Right-handed alpha
Helix 29	AD2	A	643	653	Right-handed alpha
Helix 30	AD3	A	692	708	Right-handed alpha
Helix 31	AD4	A	732	739	Right-handed alpha
Helix 32	AD5	A	743	755	Right-handed alpha
Helix 33	AD6	A	784	788	Right-handed 310
Helix 34	AD7	A	837	849	Right-handed alpha
Helix 35	AD8	A	860	865	Right-handed alpha
Helix 36	AD9	A	873	893	Right-handed alpha
Helix 37	AE1	A	897	903	Right-handed alpha
Helix 38	AE2	A	905	920	Right-handed alpha
Helix 39	AE3	A	924	956	Right-handed alpha
Helix 40	AE4	A	959	968	Right-handed alpha
Helix 41	AE5	A	971	984	Right-handed alpha
Helix 42	AE6	A	986	991	Right-handed alpha
Helix 43	AE7	A	996	1009	Right-handed alpha
Helix 44	AE8	A	1009	1018	Right-handed alpha
Helix 45	AE9	A	1020	1033	Right-handed alpha
Helix 46	AF1	B	3	8	Right-handed alpha
Helix 47	AF2	B	8	28	Right-handed alpha
Helix 48	AF3	B	53	61	Right-handed alpha
Helix 49	AF4	B	61	68	Right-handed alpha
Helix 50	AF5	B	99	113	Right-handed alpha
Helix 51	AF6	B	114	118	Right-handed 310
Helix 52	AF7	B	121	126	Right-handed alpha
Helix 53	AF8	B	150	162	Right-handed alpha
Helix 54	AF9	B	162	168	Right-handed alpha
Helix 55	AG1	B	189	194	Right-handed alpha
Helix 56	AG2	B	201	210	Right-handed alpha
Helix 57	AG3	B	242	247	Right-handed alpha
Helix 58	AG4	B	298	312	Right-handed alpha
Helix 59	AG5	B	329	358	Right-handed alpha
Helix 60	AG6	B	362	366	Right-handed 310
Helix 61	AG7	B	367	386	Right-handed alpha
Helix 62	AG8	B	391	400	Right-handed alpha
Helix 63	AG9	B	401	424	Right-handed alpha
Helix 64	AH1	B	426	454	Right-handed alpha
Helix 65	AH2	B	455	459	Right-handed 310
Helix 66	AH3	B	462	488	Right-handed alpha
Helix 67	AH4	B	488	494	Right-handed alpha
Helix 68	AH5	B	511	537	Right-handed alpha
Helix 69	AH6	B	542	558	Right-handed alpha
Helix 70	AH7	B	583	601	Right-handed alpha
Helix 71	AH8	B	633	637	Right-handed 310
Helix 72	AH9	B	643	656	Right-handed alpha
Helix 73	AI1	B	691	705	Right-handed alpha
Helix 74	AI2	B	732	739	Right-handed alpha
Helix 75	AI3	B	742	755	Right-handed alpha
Helix 76	AI4	B	777	780	Right-handed 310
Helix 77	AI5	B	785	788	Right-handed 310
Helix 78	AI6	B	836	845	Right-handed alpha
Helix 79	AI7	B	847	851	Right-handed 310
Helix 80	AI8	B	861	866	Right-handed alpha
Helix 81	AI9	B	871	893	Right-handed alpha
Helix 82	AJ1	B	898	903	Right-handed alpha
Helix 83	AJ2	B	904	919	Right-handed alpha
Helix 84	AJ3	B	924	953	Right-handed alpha
Helix 85	AJ4	B	959	992	Right-handed alpha
Helix 86	AJ5	B	996	1017	Right-handed alpha
Helix 87	AJ6	B	1017	1033	Right-handed alpha
Helix 88	AJ7	C	8	28	Right-handed alpha
Helix 89	AJ8	C	53	61	Right-handed alpha
Helix 90	AJ9	C	61	66	Right-handed alpha
Helix 91	AK1	C	99	112	Right-handed alpha
Helix 92	AK2	C	119	124	Right-handed alpha
Helix 93	AK3	C	150	162	Right-handed alpha
Helix 94	AK4	C	162	167	Right-handed alpha
Helix 95	AK5	C	190	193	Right-handed 310
Helix 96	AK6	C	199	208	Right-handed alpha
Helix 97	AK7	C	242	246	Right-handed 310
Helix 98	AK8	C	298	312	Right-handed alpha
Helix 99	AK9	C	329	359	Right-handed alpha
Helix 100	AL1	C	365	370	Right-handed alpha
Helix 101	AL2	C	370	386	Right-handed alpha
Helix 102	AL3	C	391	406	Right-handed alpha
Helix 103	AL4	C	406	423	Right-handed alpha
Helix 104	AL5	C	426	435	Right-handed alpha
Helix 105	AL6	C	438	452	Right-handed alpha
Helix 106	AL7	C	460	488	Right-handed alpha
Helix 107	AL8	C	488	496	Right-handed alpha
Helix 108	AL9	C	511	535	Right-handed alpha
Helix 109	AM1	C	538	558	Right-handed alpha
Helix 110	AM2	C	583	601	Right-handed alpha
Helix 111	AM3	C	633	637	Right-handed 310
Helix 112	AM4	C	639	642	Right-handed 310
Helix 113	AM5	C	643	656	Right-handed alpha
Helix 114	AM6	C	691	706	Right-handed alpha
Helix 115	AM7	C	732	740	Right-handed alpha
Helix 116	AM8	C	742	756	Right-handed alpha
Helix 117	AM9	C	782	788	Right-handed 310
Helix 118	AN1	C	802	804	Right-handed 310
Helix 119	AN2	C	836	850	Right-handed alpha
Helix 120	AN3	C	861	880	Right-handed alpha
Helix 121	AN4	C	883	893	Right-handed alpha
Helix 122	AN5	C	895	903	Right-handed alpha
Helix 123	AN6	C	904	919	Right-handed alpha
Helix 124	AN7	C	924	956	Right-handed alpha
Helix 125	AN8	C	959	971	Right-handed alpha
Helix 126	AN9	C	971	985	Right-handed alpha
Helix 127	AO1	C	986	990	Right-handed 310
Helix 128	AO2	C	996	1017	Right-handed alpha
Helix 129	AO3	C	1017	1033	Right-handed alpha
Helix 130	AO4	D	12	23	Right-handed alpha
Helix 131	AO5	D	26	36	Right-handed alpha
Helix 132	AO6	D	49	57	Right-handed alpha
Helix 133	AO7	D	62	67	Right-handed alpha
Helix 134	AO8	D	68	70	Right-handed 310
Helix 135	AO9	D	82	89	Right-handed alpha
Helix 136	AP1	D	92	100	Right-handed alpha
Helix 137	AP2	D	115	122	Right-handed alpha
Helix 138	AP3	D	125	134	Right-handed alpha
Helix 139	AP4	D	148	157	Right-handed alpha
Helix 140	AP5	D	158	165	Right-handed alpha
Helix 141	AP6	E	16	23	Right-handed alpha
Helix 142	AP7	E	28	37	Right-handed alpha
Helix 143	AP8	E	49	58	Right-handed alpha
Helix 144	AP9	E	59	69	Right-handed alpha
Helix 145	AQ1	E	82	91	Right-handed alpha
Helix 146	AQ2	E	92	101	Right-handed alpha
Helix 147	AQ3	E	115	123	Right-handed alpha
Helix 148	AQ4	E	125	134	Right-handed alpha
Helix 149	AQ5	E	150	156	Right-handed alpha
Helix 150	AQ6	E	158	165	Right-handed alpha

There are 21 sheets in PDB entry 6SGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	77	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	822	829	anti-parallel
Strand 7	A	717	718	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	77	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	822	829	anti-parallel
Strand 7	A	680	686	anti-parallel
Strand 8	A	855	859	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	138	144	anti-parallel
Strand 4	A	321	328	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	278	281	anti-parallel
Strand 4	A	606	613	anti-parallel
Strand 5	A	624	631	anti-parallel
Strand 6	A	571	577	anti-parallel
Strand 7	A	662	666	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	767	775	parallel
Strand 4	A	758	764	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	B	724	731	parallel
Strand 3	B	805	812	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	259	261	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	812	first strand
Strand 2	A	724	731	anti-parallel
Strand 3	C	233	235	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	792	first strand
Strand 2	A	798	800	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	48	first strand
Strand 2	B	87	94	anti-parallel
Strand 3	B	75	82	anti-parallel
Strand 4	B	816	819	anti-parallel
Strand 5	B	822	827	anti-parallel
Strand 6	B	681	686	anti-parallel
Strand 7	B	855	860	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	178	first strand
Strand 2	B	284	292	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	322	324	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	178	first strand
Strand 2	B	284	292	anti-parallel
Strand 3	B	278	281	anti-parallel
Strand 4	B	606	613	anti-parallel
Strand 5	B	624	631	anti-parallel
Strand 6	B	571	577	anti-parallel
Strand 7	B	662	667	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	767	775	parallel
Strand 4	B	758	764	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	C	724	729	parallel
Strand 4	C	807	812	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	792	first strand
Strand 2	B	798	800	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	42	47	anti-parallel
Strand 3	C	88	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	815	819	anti-parallel
Strand 6	C	822	826	anti-parallel
Strand 7	C	681	686	anti-parallel
Strand 8	C	855	860	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	284	291	anti-parallel
Strand 3	C	138	144	anti-parallel
Strand 4	C	321	328	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	284	291	anti-parallel
Strand 3	C	278	281	anti-parallel
Strand 4	C	606	613	anti-parallel
Strand 5	C	624	631	anti-parallel
Strand 6	C	571	577	anti-parallel
Strand 7	C	663	666	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	768	775	parallel
Strand 4	C	760	763	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	C	259	260	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	790	792	first strand
Strand 2	C	798	800	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SGU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SGU