Analysis of interatomic Contacts of Structural Units in PDB entry:
6SGY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SGY entry

There are 2 chains in PDB entry 6SGY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 100	ALA 501
B	ASN 100	ALA 501

There are 17 helices in PDB entry 6SGY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	124	133	Right-handed alpha
Helix 2	AA2	A	142	147	Right-handed alpha
Helix 3	AA3	A	237	244	Right-handed alpha
Helix 4	AA4	A	257	262	Right-handed alpha
Helix 5	AA5	A	319	330	Right-handed alpha
Helix 6	AA6	A	341	348	Right-handed alpha
Helix 7	AA7	A	463	471	Right-handed alpha
Helix 8	AA8	A	480	485	Right-handed alpha
Helix 9	AA9	B	124	133	Right-handed alpha
Helix 10	AB1	B	142	147	Right-handed alpha
Helix 11	AB2	B	237	244	Right-handed alpha
Helix 12	AB3	B	257	264	Right-handed alpha
Helix 13	AB4	B	319	330	Right-handed alpha
Helix 14	AB5	B	341	348	Right-handed alpha
Helix 15	AB6	B	403	408	Right-handed 310
Helix 16	AB7	B	463	471	Right-handed alpha
Helix 17	AB8	B	480	485	Right-handed alpha

There are 15 sheets in PDB entry 6SGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	105	first strand
Strand 2	A	138	141	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	172	181	anti-parallel
Strand 3	A	194	195	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	172	181	anti-parallel
Strand 3	A	374	381	anti-parallel
Strand 4	A	389	395	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	222	225	anti-parallel
Strand 3	A	208	213	anti-parallel
Strand 4	A	365	366	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	307	310	anti-parallel
Strand 3	A	315	317	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	409	first strand
Strand 2	A	421	422	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	479	first strand
Strand 2	A	427	432	parallel
Strand 3	A	444	449	anti-parallel
Strand 4	A	454	458	anti-parallel
Strand 5	A	488	489	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	139	140	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	115	first strand
Strand 2	B	118	121	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	172	181	anti-parallel
Strand 3	B	194	195	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	172	181	anti-parallel
Strand 3	B	374	381	anti-parallel
Strand 4	B	389	395	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	222	225	anti-parallel
Strand 3	B	208	213	anti-parallel
Strand 4	B	365	366	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	317	first strand
Strand 2	B	305	310	anti-parallel
Strand 3	B	295	299	anti-parallel
Strand 4	B	339	340	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	420	421	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	479	first strand
Strand 2	B	427	432	parallel
Strand 3	B	444	449	anti-parallel
Strand 4	B	454	458	anti-parallel
Strand 5	B	488	489	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SGY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SGY