Analysis of interatomic Contacts of Structural Units in PDB entry:
6SGZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SGZ entry

There are 5 chains in PDB entry 6SGZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	VAL 6	LEU 471
H	PRO 8	VAL 472
I	VAL 33	PHE 91
J	MET 1	ASN 403
D	THR 2	ALA 287

There are 60 helices in PDB entry 6SGZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	34	47	Right-handed alpha
Helix 2	AA2	E	82	87	Right-handed alpha
Helix 3	AA3	E	111	119	Right-handed alpha
Helix 4	AA4	E	127	158	Right-handed alpha
Helix 5	AA5	E	160	181	Right-handed alpha
Helix 6	AA6	E	187	196	Right-handed alpha
Helix 7	AA7	E	196	204	Right-handed alpha
Helix 8	AA8	E	214	233	Right-handed alpha
Helix 9	AA9	E	240	264	Right-handed alpha
Helix 10	AB1	E	269	285	Right-handed alpha
Helix 11	AB2	E	286	293	Right-handed alpha
Helix 12	AB3	E	294	296	Right-handed 310
Helix 13	AB4	E	319	350	Right-handed alpha
Helix 14	AB5	E	356	373	Right-handed alpha
Helix 15	AB6	E	373	378	Right-handed alpha
Helix 16	AB7	E	379	404	Right-handed alpha
Helix 17	AB8	E	409	430	Right-handed alpha
Helix 18	AB9	E	440	456	Right-handed alpha
Helix 19	AC1	E	457	467	Right-handed alpha
Helix 20	AC2	H	34	37	Right-handed 310
Helix 21	AC3	H	38	47	Right-handed alpha
Helix 22	AC4	H	82	87	Right-handed alpha
Helix 23	AC5	H	115	124	Right-handed alpha
Helix 24	AC6	H	129	159	Right-handed alpha
Helix 25	AC7	H	160	179	Right-handed alpha
Helix 26	AC8	H	187	206	Right-handed alpha
Helix 27	AC9	H	215	234	Right-handed alpha
Helix 28	AD1	H	241	264	Right-handed alpha
Helix 29	AD2	H	267	285	Right-handed alpha
Helix 30	AD3	H	287	294	Right-handed alpha
Helix 31	AD4	H	313	345	Right-handed alpha
Helix 32	AD5	H	345	350	Right-handed alpha
Helix 33	AD6	H	356	373	Right-handed alpha
Helix 34	AD7	H	374	376	Right-handed 310
Helix 35	AD8	H	379	404	Right-handed alpha
Helix 36	AD9	H	408	429	Right-handed alpha
Helix 37	AE1	H	435	439	Right-handed 310
Helix 38	AE2	H	440	467	Right-handed alpha
Helix 39	AE3	H	468	471	Right-handed 310
Helix 40	AE4	I	34	55	Right-handed alpha
Helix 41	AE5	I	62	90	Right-handed alpha
Helix 42	AE6	J	93	130	Right-handed alpha
Helix 43	AE7	J	134	139	Right-handed 310
Helix 44	AE8	J	183	197	Right-handed alpha
Helix 45	AE9	J	210	212	Right-handed 310
Helix 46	AF1	J	220	237	Right-handed alpha
Helix 47	AF2	J	257	263	Right-handed 310
Helix 48	AF3	J	285	294	Right-handed alpha
Helix 49	AF4	J	295	297	Right-handed 310
Helix 50	AF5	J	386	399	Right-handed alpha
Helix 51	AF6	D	3	17	Right-handed alpha
Helix 52	AF7	D	27	38	Right-handed alpha
Helix 53	AF8	D	49	62	Right-handed alpha
Helix 54	AF9	D	86	88	Right-handed 310
Helix 55	AG1	D	89	95	Right-handed alpha
Helix 56	AG2	D	96	98	Right-handed 310
Helix 57	AG3	D	131	140	Right-handed alpha
Helix 58	AG4	D	143	163	Right-handed alpha
Helix 59	AG5	D	207	212	Right-handed alpha
Helix 60	AG6	D	265	270	Right-handed alpha

There are 6 sheets in PDB entry 6SGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	93	98	anti-parallel
Strand 3	E	9	16	parallel
Strand 4	E	23	30	anti-parallel
Strand 5	H	110	111	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	30	first strand
Strand 2	H	9	15	anti-parallel
Strand 3	H	93	98	parallel
Strand 4	H	67	71	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	23	24	first strand
Strand 2	J	172	173	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	165	first strand
Strand 2	J	200	208	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	244	249	first strand
Strand 2	J	313	318	parallel
Strand 3	J	337	343	parallel
Strand 4	J	214	218	parallel
Strand 5	J	359	362	parallel
Strand 6	J	367	369	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	75	81	anti-parallel
Strand 3	D	120	127	anti-parallel
Strand 4	D	106	111	anti-parallel
Strand 5	D	221	228	anti-parallel
Strand 6	D	233	241	anti-parallel
Strand 7	D	195	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SGZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SGZ