Analysis of interatomic Contacts of Structural Units in PDB entry:
6SHD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SHD entry

There are 2 chains in PDB entry 6SHD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 54GLU 391
B
 ASP 54TRP 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6SHD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 71Right-handed alpha
Helix 2
AA2
A
72 76Right-handed 310
Helix 3
AA3
A
88 107Right-handed alpha
Helix 4
AA4
A
110 126Right-handed alpha
Helix 5
AA5
A
134 153Right-handed alpha
Helix 6
AA6
A
154 171Right-handed alpha
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
195 210Right-handed alpha
Helix 9
AA9
A
211 230Right-handed alpha
Helix 10
AB1
A
256 275Right-handed alpha
Helix 11
AB2
A
276 292Right-handed alpha
Helix 12
AB3
A
307 311Right-handed 310
Helix 13
AB4
A
312 326Right-handed alpha
Helix 14
AB5
A
331 353Right-handed alpha
Helix 15
AB6
A
373 390Right-handed alpha
Helix 16
AB7
B
55 71Right-handed alpha
Helix 17
AB8
B
72 76Right-handed 310
Helix 18
AB9
B
88 107Right-handed alpha
Helix 19
AC1
B
110 126Right-handed alpha
Helix 20
AC2
B
134 153Right-handed alpha
Helix 21
AC3
B
154 171Right-handed alpha
Helix 22
AC4
B
174 178Right-handed 310
Helix 23
AC5
B
192 210Right-handed alpha
Helix 24
AC6
B
211 229Right-handed alpha
Helix 25
AC7
B
256 275Right-handed alpha
Helix 26
AC8
B
276 292Right-handed alpha
Helix 27
AC9
B
307 311Right-handed 310
Helix 28
AD1
B
312 326Right-handed alpha
Helix 29
AD2
B
331 353Right-handed alpha
Helix 30
AD3
B
373 390Right-handed alpha
Helix 31
AD4
C
55 71Right-handed alpha
Helix 32
AD5
C
72 76Right-handed 310
Helix 33
AD6
C
88 107Right-handed alpha
Helix 34
AD7
C
110 126Right-handed alpha
Helix 35
AD8
C
134 153Right-handed alpha
Helix 36
AD9
C
154 171Right-handed alpha
Helix 37
AE1
C
174 178Right-handed 310
Helix 38
AE2
C
195 210Right-handed alpha
Helix 39
AE3
C
211 230Right-handed alpha
Helix 40
AE4
C
256 275Right-handed alpha
Helix 41
AE5
C
276 292Right-handed alpha
Helix 42
AE6
C
307 311Right-handed 310
Helix 43
AE7
C
312 326Right-handed alpha
Helix 44
AE8
C
331 353Right-handed alpha
Helix 45
AE9
C
373 391Right-handed alpha
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There are 6 sheets in PDB entry 6SHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
240 244anti-parallel
Strand 4
A
247 250anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
301 302anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 191first strand
Strand 2
B
240 244anti-parallel
Strand 3
B
247 250anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 298first strand
Strand 2
B
301 302anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 183first strand
Strand 2
C
186 191anti-parallel
Strand 3
C
238 244anti-parallel
Strand 4
C
247 255anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
297 298first strand
Strand 2
C
301 302anti-parallel
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