Analysis of interatomic Contacts of Structural Units in PDB entry:
6SHH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SHH entry

There are 6 chains in PDB entry 6SHH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 16	ARG 246
B	ILE 16	ARG 246
C	ILE 16	ARG 246
D	ILE 16	ARG 246
E	ILE 16	ARG 246
F	ILE 16	THR 217

There are 32 helices in PDB entry 6SHH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	59	Right-handed 310
Helix 2	AA2	A	164	173	Right-handed alpha
Helix 3	AA3	A	174	176	Right-handed 310
Helix 4	AA4	A	234	245	Right-handed alpha
Helix 5	AA5	B	55	59	Right-handed 310
Helix 6	AA6	B	164	173	Right-handed alpha
Helix 7	AA7	B	174	176	Right-handed 310
Helix 8	AA8	B	234	245	Right-handed alpha
Helix 9	AA9	C	55	59	Right-handed 310
Helix 10	AB1	C	164	173	Right-handed alpha
Helix 11	AB2	C	174	176	Right-handed 310
Helix 12	AB3	C	234	246	Right-handed alpha
Helix 13	AB4	D	55	59	Right-handed 310
Helix 14	AB5	D	164	173	Right-handed alpha
Helix 15	AB6	D	174	176	Right-handed 310
Helix 16	AB7	D	234	245	Right-handed alpha
Helix 17	AB8	E	55	59	Right-handed 310
Helix 18	AB9	E	164	173	Right-handed alpha
Helix 19	AC1	E	174	176	Right-handed 310
Helix 20	AC2	E	234	245	Right-handed alpha
Helix 21	AC3	F	55	59	Right-handed 310
Helix 22	AC4	F	164	173	Right-handed alpha
Helix 23	AC5	F	174	176	Right-handed 310
Helix 24	AC6	F	234	245	Right-handed alpha
Helix 25	AC7	G	55	59	Right-handed 310
Helix 26	AC8	G	164	173	Right-handed alpha
Helix 27	AC9	G	174	176	Right-handed 310
Helix 28	AD1	G	234	245	Right-handed alpha
Helix 29	AD2	H	55	59	Right-handed 310
Helix 30	AD3	H	164	173	Right-handed alpha
Helix 31	AD4	H	174	176	Right-handed 310
Helix 32	AD5	H	234	245	Right-handed alpha

There are 16 sheets in PDB entry 6SHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	156	163	anti-parallel
Strand 3	A	180	184	anti-parallel
Strand 4	A	226	230	anti-parallel
Strand 5	A	208	215	anti-parallel
Strand 6	A	198	201	anti-parallel
Strand 7	A	135	140	anti-parallel
Strand 8	A	156	163	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	39	48	anti-parallel
Strand 3	A	51	54	anti-parallel
Strand 4	A	104	108	anti-parallel
Strand 5	A	81	90	anti-parallel
Strand 6	A	64	68	anti-parallel
Strand 7	A	30	35	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	156	163	anti-parallel
Strand 3	B	180	184	anti-parallel
Strand 4	B	226	230	anti-parallel
Strand 5	B	208	215	anti-parallel
Strand 6	B	198	201	anti-parallel
Strand 7	B	135	140	anti-parallel
Strand 8	B	156	163	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	35	first strand
Strand 2	B	39	48	anti-parallel
Strand 3	B	51	54	anti-parallel
Strand 4	B	104	108	anti-parallel
Strand 5	B	81	90	anti-parallel
Strand 6	B	64	68	anti-parallel
Strand 7	B	30	35	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	156	163	anti-parallel
Strand 3	C	180	184	anti-parallel
Strand 4	C	226	230	anti-parallel
Strand 5	C	208	215	anti-parallel
Strand 6	C	198	201	anti-parallel
Strand 7	C	135	140	anti-parallel
Strand 8	C	156	163	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	35	first strand
Strand 2	C	39	48	anti-parallel
Strand 3	C	51	54	anti-parallel
Strand 4	C	104	108	anti-parallel
Strand 5	C	81	90	anti-parallel
Strand 6	C	64	68	anti-parallel
Strand 7	C	30	35	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	156	163	anti-parallel
Strand 3	D	180	184	anti-parallel
Strand 4	D	226	230	anti-parallel
Strand 5	D	208	215	anti-parallel
Strand 6	D	198	201	anti-parallel
Strand 7	D	135	140	anti-parallel
Strand 8	D	156	163	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	35	first strand
Strand 2	D	39	48	anti-parallel
Strand 3	D	51	54	anti-parallel
Strand 4	D	104	108	anti-parallel
Strand 5	D	81	90	anti-parallel
Strand 6	D	64	68	anti-parallel
Strand 7	D	30	35	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	156	163	anti-parallel
Strand 3	E	180	184	anti-parallel
Strand 4	E	226	230	anti-parallel
Strand 5	E	208	215	anti-parallel
Strand 6	E	198	201	anti-parallel
Strand 7	E	135	140	anti-parallel
Strand 8	E	156	163	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	35	first strand
Strand 2	E	39	48	anti-parallel
Strand 3	E	51	54	anti-parallel
Strand 4	E	104	108	anti-parallel
Strand 5	E	81	90	anti-parallel
Strand 6	E	64	68	anti-parallel
Strand 7	E	30	35	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	21	first strand
Strand 2	F	156	163	anti-parallel
Strand 3	F	180	184	anti-parallel
Strand 4	F	226	230	anti-parallel
Strand 5	F	208	215	anti-parallel
Strand 6	F	198	201	anti-parallel
Strand 7	F	135	140	anti-parallel
Strand 8	F	156	163	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	85	first strand
Strand 2	F	64	68	anti-parallel
Strand 3	F	30	35	anti-parallel
Strand 4	F	39	48	anti-parallel
Strand 5	F	51	54	anti-parallel
Strand 6	F	104	107	anti-parallel
Strand 7	F	87	90	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	21	first strand
Strand 2	G	156	163	anti-parallel
Strand 3	G	180	184	anti-parallel
Strand 4	G	226	230	anti-parallel
Strand 5	G	208	215	anti-parallel
Strand 6	G	198	201	anti-parallel
Strand 7	G	135	140	anti-parallel
Strand 8	G	156	163	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	85	first strand
Strand 2	G	64	68	anti-parallel
Strand 3	G	30	35	anti-parallel
Strand 4	G	39	48	anti-parallel
Strand 5	G	51	54	anti-parallel
Strand 6	G	104	107	anti-parallel
Strand 7	G	87	90	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	H	156	163	anti-parallel
Strand 3	H	180	184	anti-parallel
Strand 4	H	226	230	anti-parallel
Strand 5	H	208	215	anti-parallel
Strand 6	H	198	201	anti-parallel
Strand 7	H	135	140	anti-parallel
Strand 8	H	156	163	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	35	first strand
Strand 2	H	39	48	anti-parallel
Strand 3	H	51	54	anti-parallel
Strand 4	H	104	108	anti-parallel
Strand 5	H	81	90	anti-parallel
Strand 6	H	64	68	anti-parallel
Strand 7	H	30	35	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SHH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SHH