Analysis of interatomic Contacts of Structural Units in PDB entry:
6SHJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SHJ entry

There are 4 chains in PDB entry 6SHJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LEU 10	ARG 431
A	LEU 10	ARG 431
B	LEU 10	ARG 431
C	LEU 10	ARG 431

There are 54 helices in PDB entry 6SHJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	D	13	18	Right-handed alpha
Helix 2	2	D	42	44	Right-handed 310
Helix 3	3	D	54	63	Right-handed alpha
Helix 4	4	D	79	86	Right-handed alpha
Helix 5	5	D	93	95	Right-handed 310
Helix 6	6	D	125	131	Right-handed alpha
Helix 7	7	D	150	159	Right-handed alpha
Helix 8	8	D	175	177	Right-handed 310
Helix 9	9	D	221	231	Right-handed alpha
Helix 10	10	D	245	251	Right-handed alpha
Helix 11	11	D	259	261	Right-handed 310
Helix 12	12	D	280	288	Right-handed alpha
Helix 13	13	D	419	425	Right-handed alpha
Helix 14	14	A	15	18	Right-handed alpha
Helix 15	15	A	42	44	Right-handed 310
Helix 16	16	A	53	63	Right-handed alpha
Helix 17	17	A	81	87	Right-handed alpha
Helix 18	18	A	117	123	Right-handed 310
Helix 19	19	A	129	131	Right-handed 310
Helix 20	20	A	149	158	Right-handed alpha
Helix 21	21	A	175	177	Right-handed 310
Helix 22	22	A	220	231	Right-handed alpha
Helix 23	23	A	244	251	Right-handed alpha
Helix 24	24	A	259	261	Right-handed 310
Helix 25	25	A	282	290	Right-handed alpha
Helix 26	26	A	400	406	Right-handed alpha
Helix 27	27	A	419	425	Right-handed alpha
Helix 28	28	B	13	18	Right-handed alpha
Helix 29	29	B	42	44	Right-handed 310
Helix 30	30	B	54	63	Right-handed alpha
Helix 31	31	B	79	86	Right-handed alpha
Helix 32	32	B	93	95	Right-handed 310
Helix 33	33	B	125	131	Right-handed alpha
Helix 34	34	B	150	159	Right-handed alpha
Helix 35	35	B	175	177	Right-handed 310
Helix 36	36	B	221	231	Right-handed alpha
Helix 37	37	B	245	251	Right-handed alpha
Helix 38	38	B	259	261	Right-handed 310
Helix 39	39	B	280	288	Right-handed alpha
Helix 40	40	B	419	425	Right-handed alpha
Helix 41	41	C	15	18	Right-handed alpha
Helix 42	42	C	42	44	Right-handed 310
Helix 43	43	C	53	63	Right-handed alpha
Helix 44	44	C	81	87	Right-handed alpha
Helix 45	45	C	117	123	Right-handed 310
Helix 46	46	C	129	131	Right-handed 310
Helix 47	47	C	149	158	Right-handed alpha
Helix 48	48	C	175	177	Right-handed 310
Helix 49	49	C	220	231	Right-handed alpha
Helix 50	50	C	244	251	Right-handed alpha
Helix 51	51	C	259	261	Right-handed 310
Helix 52	52	C	282	290	Right-handed alpha
Helix 53	53	C	400	406	Right-handed alpha
Helix 54	54	C	419	425	Right-handed alpha

There are 24 sheets in PDB entry 6SHJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	68	71	parallel
Strand 3	D	20	24	parallel
Strand 4	D	135	139	parallel
Strand 5	D	216	218	anti-parallel
Strand 6	D	163	167	anti-parallel
Strand 7	D	254	258	parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	171	first strand
Strand 2	D	208	212	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	182	first strand
Strand 2	D	191	194	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	319	first strand
Strand 2	D	339	341	parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	363	first strand
Strand 2	D	378	380	parallel

Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	367	first strand
Strand 2	D	382	384	parallel
Strand 3	D	415	417	parallel

Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	103	first strand
Strand 2	A	68	73	parallel
Strand 3	A	20	24	parallel
Strand 4	A	135	138	parallel
Strand 5	A	216	219	anti-parallel
Strand 6	A	163	167	anti-parallel
Strand 7	A	254	258	parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	171	first strand
Strand 2	A	208	211	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	339	341	parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	363	first strand
Strand 2	A	378	380	parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	382	384	parallel
Strand 3	A	415	417	parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	183	first strand
Strand 2	A	189	193	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	68	71	parallel
Strand 3	B	20	25	parallel
Strand 4	B	135	140	parallel
Strand 5	B	216	218	anti-parallel
Strand 6	B	163	167	anti-parallel
Strand 7	B	254	258	parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	208	212	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	182	first strand
Strand 2	B	191	194	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	339	341	parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	363	first strand
Strand 2	B	378	380	parallel

Back to list of sheets
Back to top of page

There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	367	first strand
Strand 2	B	382	384	parallel
Strand 3	B	415	417	parallel

Back to list of sheets
Back to top of page

There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	103	first strand
Strand 2	C	68	73	parallel
Strand 3	C	20	24	parallel
Strand 4	C	135	138	parallel
Strand 5	C	216	219	anti-parallel
Strand 6	C	163	167	anti-parallel
Strand 7	C	254	258	parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	171	first strand
Strand 2	C	208	211	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	319	first strand
Strand 2	C	339	341	parallel

Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	363	first strand
Strand 2	C	378	380	parallel

Back to list of sheets
Back to top of page

There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	367	first strand
Strand 2	C	382	384	parallel
Strand 3	C	415	417	parallel

Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	183	first strand
Strand 2	C	189	193	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SHJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SHJ