Analysis of interatomic Contacts of Structural Units in PDB entry:
6SHN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SHN entry

There are 4 chains in PDB entry 6SHN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LEU 10	ARG 431
A	LEU 10	ARG 431
C	LEU 10	ARG 431
B	LEU 10	ARG 431

There are 59 helices in PDB entry 6SHN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	11	19	Right-handed alpha
Helix 2	AA2	D	41	44	Right-handed 310
Helix 3	AA3	D	54	64	Right-handed alpha
Helix 4	AA4	D	78	88	Right-handed alpha
Helix 5	AA5	D	117	124	Right-handed alpha
Helix 6	AA6	D	124	130	Right-handed alpha
Helix 7	AA7	D	148	160	Right-handed alpha
Helix 8	AA8	D	173	177	Right-handed 310
Helix 9	AA9	D	220	232	Right-handed alpha
Helix 10	AB1	D	239	252	Right-handed alpha
Helix 11	AB2	D	260	262	Right-handed 310
Helix 12	AB3	D	279	292	Right-handed alpha
Helix 13	AB4	D	399	407	Right-handed alpha
Helix 14	AB5	D	418	425	Right-handed alpha
Helix 15	AB6	A	11	16	Right-handed alpha
Helix 16	AB7	A	41	45	Right-handed 310
Helix 17	AB8	A	54	64	Right-handed alpha
Helix 18	AB9	A	78	88	Right-handed alpha
Helix 19	AC1	A	117	124	Right-handed alpha
Helix 20	AC2	A	124	130	Right-handed alpha
Helix 21	AC3	A	148	159	Right-handed alpha
Helix 22	AC4	A	173	177	Right-handed 310
Helix 23	AC5	A	220	232	Right-handed alpha
Helix 24	AC6	A	239	252	Right-handed alpha
Helix 25	AC7	A	260	262	Right-handed 310
Helix 26	AC8	A	279	292	Right-handed alpha
Helix 27	AC9	A	399	407	Right-handed alpha
Helix 28	AD1	A	418	426	Right-handed alpha
Helix 29	AD2	C	11	19	Right-handed alpha
Helix 30	AD3	C	41	45	Right-handed 310
Helix 31	AD4	C	53	65	Right-handed alpha
Helix 32	AD5	C	78	88	Right-handed alpha
Helix 33	AD6	C	92	96	Right-handed 310
Helix 34	AD7	C	117	124	Right-handed alpha
Helix 35	AD8	C	124	130	Right-handed alpha
Helix 36	AD9	C	149	159	Right-handed alpha
Helix 37	AE1	C	173	177	Right-handed 310
Helix 38	AE2	C	220	232	Right-handed alpha
Helix 39	AE3	C	243	252	Right-handed alpha
Helix 40	AE4	C	260	262	Right-handed 310
Helix 41	AE5	C	279	292	Right-handed alpha
Helix 42	AE6	C	399	407	Right-handed alpha
Helix 43	AE7	C	418	426	Right-handed alpha
Helix 44	AE8	B	14	19	Right-handed alpha
Helix 45	AE9	B	41	44	Right-handed 310
Helix 46	AF1	B	53	64	Right-handed alpha
Helix 47	AF2	B	77	87	Right-handed alpha
Helix 48	AF3	B	92	96	Right-handed 310
Helix 49	AF4	B	117	124	Right-handed alpha
Helix 50	AF5	B	124	129	Right-handed alpha
Helix 51	AF6	B	130	132	Right-handed 310
Helix 52	AF7	B	148	159	Right-handed alpha
Helix 53	AF8	B	173	177	Right-handed 310
Helix 54	AF9	B	220	232	Right-handed alpha
Helix 55	AG1	B	243	252	Right-handed alpha
Helix 56	AG2	B	260	262	Right-handed 310
Helix 57	AG3	B	279	292	Right-handed alpha
Helix 58	AG4	B	399	407	Right-handed alpha
Helix 59	AG5	B	418	426	Right-handed alpha

There are 24 sheets in PDB entry 6SHN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	68	71	parallel
Strand 3	D	20	24	parallel
Strand 4	D	135	139	parallel
Strand 5	D	208	219	anti-parallel
Strand 6	D	163	171	anti-parallel
Strand 7	D	254	258	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	51	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	274	275	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	183	first strand
Strand 2	D	189	194	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	C	327	330	anti-parallel
Strand 3	C	344	346	parallel
Strand 4	C	361	367	parallel
Strand 5	C	349	350	parallel
Strand 6	C	332	334	parallel
Strand 7	D	316	319	anti-parallel
Strand 8	D	339	341	parallel
Strand 9	D	355	356	parallel
Strand 10	D	372	373	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	C	327	330	anti-parallel
Strand 3	C	344	346	parallel
Strand 4	C	361	367	parallel
Strand 5	C	378	384	parallel
Strand 6	C	415	417	parallel
Strand 7	C	408	409	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	346	first strand
Strand 2	D	361	367	parallel
Strand 3	D	378	384	parallel
Strand 4	D	415	417	parallel
Strand 5	D	408	409	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	396	first strand
Strand 2	D	378	384	parallel
Strand 3	D	361	367	parallel
Strand 4	D	349	350	parallel
Strand 5	D	332	334	parallel
Strand 6	C	316	319	anti-parallel
Strand 7	C	339	341	parallel
Strand 8	C	355	356	parallel
Strand 9	C	372	373	parallel
Strand 10	C	389	390	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	68	71	parallel
Strand 3	A	20	24	parallel
Strand 4	A	135	139	parallel
Strand 5	A	208	219	anti-parallel
Strand 6	A	163	171	anti-parallel
Strand 7	A	254	258	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	145	first strand
Strand 2	A	274	276	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	189	194	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	B	327	330	anti-parallel
Strand 3	B	344	346	parallel
Strand 4	B	361	367	parallel
Strand 5	B	378	384	parallel
Strand 6	B	395	396	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	355	356	parallel
Strand 3	A	339	341	parallel
Strand 4	A	316	319	parallel
Strand 5	B	332	334	anti-parallel
Strand 6	B	349	350	parallel
Strand 7	B	361	367	parallel
Strand 8	B	378	384	parallel
Strand 9	B	415	417	parallel
Strand 10	B	408	409	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	349	350	parallel
Strand 3	A	361	367	parallel
Strand 4	A	378	384	parallel
Strand 5	A	395	396	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	346	first strand
Strand 2	A	361	367	parallel
Strand 3	A	378	384	parallel
Strand 4	A	415	417	parallel
Strand 5	A	408	409	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	68	71	parallel
Strand 3	C	20	24	parallel
Strand 4	C	135	139	parallel
Strand 5	C	208	219	anti-parallel
Strand 6	C	163	171	anti-parallel
Strand 7	C	254	258	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	274	275	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	183	first strand
Strand 2	C	189	194	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	135	139	parallel
Strand 3	B	208	219	anti-parallel
Strand 4	B	163	171	anti-parallel
Strand 5	B	254	258	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	51	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	71	first strand
Strand 2	B	98	101	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	145	first strand
Strand 2	B	274	276	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	189	194	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	339	341	parallel
Strand 3	B	355	356	parallel
Strand 4	B	372	373	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SHN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SHN