Analysis of interatomic Contacts of Structural Units in PDB entry:
6SHQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SHQ entry

There are 4 chains in PDB entry 6SHQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	ARG 431
D	ASP 8	ARG 431
C	ASP 8	ARG 431
B	ASP 8	ARG 431

There are 50 helices in PDB entry 6SHQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	41	44	Right-handed 310
Helix 3	AA3	A	55	63	Right-handed alpha
Helix 4	AA4	A	77	88	Right-handed alpha
Helix 5	AA5	A	92	96	Right-handed 310
Helix 6	AA6	A	128	132	Right-handed 310
Helix 7	AA7	A	151	159	Right-handed alpha
Helix 8	AA8	A	220	232	Right-handed alpha
Helix 9	AA9	A	243	250	Right-handed alpha
Helix 10	AB1	A	279	289	Right-handed alpha
Helix 11	AB2	A	399	407	Right-handed alpha
Helix 12	AB3	A	418	425	Right-handed alpha
Helix 13	AB4	D	30	38	Right-handed 310
Helix 14	AB5	D	55	63	Right-handed alpha
Helix 15	AB6	D	77	88	Right-handed alpha
Helix 16	AB7	D	92	96	Right-handed 310
Helix 17	AB8	D	116	120	Right-handed 310
Helix 18	AB9	D	122	126	Right-handed 310
Helix 19	AC1	D	128	132	Right-handed 310
Helix 20	AC2	D	151	159	Right-handed alpha
Helix 21	AC3	D	220	232	Right-handed alpha
Helix 22	AC4	D	243	250	Right-handed alpha
Helix 23	AC5	D	279	289	Right-handed alpha
Helix 24	AC6	D	399	407	Right-handed alpha
Helix 25	AC7	D	418	424	Right-handed alpha
Helix 26	AC8	C	30	34	Right-handed 310
Helix 27	AC9	C	41	44	Right-handed 310
Helix 28	AD1	C	55	63	Right-handed alpha
Helix 29	AD2	C	77	88	Right-handed alpha
Helix 30	AD3	C	92	96	Right-handed 310
Helix 31	AD4	C	128	132	Right-handed 310
Helix 32	AD5	C	151	159	Right-handed alpha
Helix 33	AD6	C	220	232	Right-handed alpha
Helix 34	AD7	C	243	250	Right-handed alpha
Helix 35	AD8	C	279	289	Right-handed alpha
Helix 36	AD9	C	399	407	Right-handed alpha
Helix 37	AE1	C	418	425	Right-handed alpha
Helix 38	AE2	B	30	38	Right-handed 310
Helix 39	AE3	B	55	63	Right-handed alpha
Helix 40	AE4	B	77	88	Right-handed alpha
Helix 41	AE5	B	92	96	Right-handed 310
Helix 42	AE6	B	116	120	Right-handed 310
Helix 43	AE7	B	122	126	Right-handed 310
Helix 44	AE8	B	128	132	Right-handed 310
Helix 45	AE9	B	151	159	Right-handed alpha
Helix 46	AF1	B	220	232	Right-handed alpha
Helix 47	AF2	B	243	250	Right-handed alpha
Helix 48	AF3	B	279	289	Right-handed alpha
Helix 49	AF4	B	399	407	Right-handed alpha
Helix 50	AF5	B	418	424	Right-handed alpha

There are 18 sheets in PDB entry 6SHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	68	71	parallel
Strand 3	A	20	24	parallel
Strand 4	A	135	139	parallel
Strand 5	A	208	219	anti-parallel
Strand 6	A	179	182	anti-parallel
Strand 7	A	191	194	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	68	71	parallel
Strand 3	A	20	24	parallel
Strand 4	A	135	139	parallel
Strand 5	A	208	219	anti-parallel
Strand 6	A	163	171	anti-parallel
Strand 7	A	254	258	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	51	52	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	372	373	parallel
Strand 3	A	355	356	parallel
Strand 4	A	339	341	parallel
Strand 5	A	316	319	parallel
Strand 6	B	332	334	anti-parallel
Strand 7	B	349	350	parallel
Strand 8	B	366	367	parallel
Strand 9	B	382	384	parallel
Strand 10	B	415	417	parallel
Strand 11	B	408	409	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	396	first strand
Strand 2	A	378	384	parallel
Strand 3	A	361	367	parallel
Strand 4	A	349	350	parallel
Strand 5	A	332	334	parallel
Strand 6	B	316	319	anti-parallel
Strand 7	B	339	341	parallel
Strand 8	B	355	356	parallel
Strand 9	B	372	373	parallel
Strand 10	B	389	390	parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	409	first strand
Strand 2	A	415	417	anti-parallel
Strand 3	A	378	384	parallel
Strand 4	A	361	367	parallel
Strand 5	A	344	346	parallel
Strand 6	A	327	330	parallel
Strand 7	B	327	330	anti-parallel
Strand 8	B	344	346	parallel
Strand 9	B	361	363	parallel
Strand 10	B	378	380	parallel
Strand 11	B	395	396	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	68	71	parallel
Strand 3	D	20	24	parallel
Strand 4	D	135	139	parallel
Strand 5	D	208	219	anti-parallel
Strand 6	D	179	182	anti-parallel
Strand 7	D	191	194	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	68	71	parallel
Strand 3	D	20	24	parallel
Strand 4	D	135	139	parallel
Strand 5	D	208	219	anti-parallel
Strand 6	D	163	171	anti-parallel
Strand 7	D	254	258	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	51	52	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	390	first strand
Strand 2	D	372	373	parallel
Strand 3	D	355	356	parallel
Strand 4	D	339	341	parallel
Strand 5	D	316	319	parallel
Strand 6	C	332	334	anti-parallel
Strand 7	C	349	350	parallel
Strand 8	C	361	367	parallel
Strand 9	C	378	384	parallel
Strand 10	C	395	396	parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	396	first strand
Strand 2	D	378	380	parallel
Strand 3	D	361	363	parallel
Strand 4	D	344	346	parallel
Strand 5	D	327	330	parallel
Strand 6	C	327	330	anti-parallel
Strand 7	C	344	346	parallel
Strand 8	C	361	367	parallel
Strand 9	C	378	384	parallel
Strand 10	C	415	417	parallel
Strand 11	C	408	409	anti-parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	409	first strand
Strand 2	D	415	417	anti-parallel
Strand 3	D	382	384	parallel
Strand 4	D	366	367	parallel
Strand 5	D	349	350	parallel
Strand 6	D	332	334	parallel
Strand 7	C	316	319	anti-parallel
Strand 8	C	339	341	parallel
Strand 9	C	355	356	parallel
Strand 10	C	372	373	parallel
Strand 11	C	389	390	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	68	71	parallel
Strand 3	C	20	24	parallel
Strand 4	C	135	139	parallel
Strand 5	C	208	219	anti-parallel
Strand 6	C	179	182	anti-parallel
Strand 7	C	191	194	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	68	71	parallel
Strand 3	C	20	24	parallel
Strand 4	C	135	139	parallel
Strand 5	C	208	219	anti-parallel
Strand 6	C	163	171	anti-parallel
Strand 7	C	254	258	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	51	52	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	68	71	parallel
Strand 3	B	20	24	parallel
Strand 4	B	135	139	parallel
Strand 5	B	208	219	anti-parallel
Strand 6	B	179	182	anti-parallel
Strand 7	B	191	194	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	68	71	parallel
Strand 3	B	20	24	parallel
Strand 4	B	135	139	parallel
Strand 5	B	208	219	anti-parallel
Strand 6	B	163	171	anti-parallel
Strand 7	B	254	258	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	51	52	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SHQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SHQ