Analysis of interatomic Contacts of Structural Units in PDB entry:
6SI7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SI7 entry

There are 18 chains in PDB entry 6SI7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PRO 35
P	ALA 10	PRO 260
B	GLY 1	PRO 35
J	ALA 10	PRO 260
C	GLY 1	PRO 35
K	ALA 10	PRO 260
D	GLY 1	PRO 35
L	ALA 10	PRO 260
E	GLY 1	PRO 35
M	ALA 10	PRO 260
F	GLY 1	PRO 35
N	ALA 10	PRO 260
G	GLY 1	PRO 35
O	ALA 10	PRO 260
H	GLY 1	PRO 35
Q	ALA 10	PRO 260
I	GLY 1	PRO 35
R	ALA 10	PRO 260

There are 63 helices in PDB entry 6SI7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	17	Right-handed 310
Helix 2	AA2	A	18	29	Right-handed alpha
Helix 3	AA3	P	18	26	Right-handed alpha
Helix 4	AA4	P	63	74	Right-handed alpha
Helix 5	AA5	P	85	100	Right-handed alpha
Helix 6	AA6	P	211	230	Right-handed alpha
Helix 7	AA7	P	251	256	Right-handed alpha
Helix 8	AA8	B	15	17	Right-handed 310
Helix 9	AA9	B	18	29	Right-handed alpha
Helix 10	AB1	J	18	26	Right-handed alpha
Helix 11	AB2	J	63	74	Right-handed alpha
Helix 12	AB3	J	85	100	Right-handed alpha
Helix 13	AB4	J	211	230	Right-handed alpha
Helix 14	AB5	J	251	256	Right-handed alpha
Helix 15	AB6	C	15	17	Right-handed 310
Helix 16	AB7	C	18	29	Right-handed alpha
Helix 17	AB8	K	18	26	Right-handed alpha
Helix 18	AB9	K	63	74	Right-handed alpha
Helix 19	AC1	K	85	100	Right-handed alpha
Helix 20	AC2	K	211	230	Right-handed alpha
Helix 21	AC3	K	251	256	Right-handed alpha
Helix 22	AC4	D	15	17	Right-handed 310
Helix 23	AC5	D	18	29	Right-handed alpha
Helix 24	AC6	L	18	26	Right-handed alpha
Helix 25	AC7	L	63	74	Right-handed alpha
Helix 26	AC8	L	85	100	Right-handed alpha
Helix 27	AC9	L	211	230	Right-handed alpha
Helix 28	AD1	L	251	256	Right-handed alpha
Helix 29	AD2	E	15	17	Right-handed 310
Helix 30	AD3	E	18	29	Right-handed alpha
Helix 31	AD4	M	18	26	Right-handed alpha
Helix 32	AD5	M	63	74	Right-handed alpha
Helix 33	AD6	M	85	100	Right-handed alpha
Helix 34	AD7	M	211	230	Right-handed alpha
Helix 35	AD8	M	251	256	Right-handed alpha
Helix 36	AD9	F	15	17	Right-handed 310
Helix 37	AE1	F	18	29	Right-handed alpha
Helix 38	AE2	N	18	26	Right-handed alpha
Helix 39	AE3	N	63	74	Right-handed alpha
Helix 40	AE4	N	85	100	Right-handed alpha
Helix 41	AE5	N	211	230	Right-handed alpha
Helix 42	AE6	N	251	256	Right-handed alpha
Helix 43	AE7	G	15	17	Right-handed 310
Helix 44	AE8	G	18	29	Right-handed alpha
Helix 45	AE9	O	18	26	Right-handed alpha
Helix 46	AF1	O	63	74	Right-handed alpha
Helix 47	AF2	O	85	100	Right-handed alpha
Helix 48	AF3	O	211	230	Right-handed alpha
Helix 49	AF4	O	251	256	Right-handed alpha
Helix 50	AF5	H	15	17	Right-handed 310
Helix 51	AF6	H	18	29	Right-handed alpha
Helix 52	AF7	Q	18	26	Right-handed alpha
Helix 53	AF8	Q	63	74	Right-handed alpha
Helix 54	AF9	Q	85	100	Right-handed alpha
Helix 55	AG1	Q	211	230	Right-handed alpha
Helix 56	AG2	Q	251	256	Right-handed alpha
Helix 57	AG3	I	15	17	Right-handed 310
Helix 58	AG4	I	18	29	Right-handed alpha
Helix 59	AG5	R	18	26	Right-handed alpha
Helix 60	AG6	R	63	74	Right-handed alpha
Helix 61	AG7	R	85	100	Right-handed alpha
Helix 62	AG8	R	211	230	Right-handed alpha
Helix 63	AG9	R	251	256	Right-handed alpha

There are 19 sheets in PDB entry 6SI7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	42	43	first strand
Strand 2	P	121	131	parallel
Strand 3	P	34	38	parallel
Strand 4	P	78	82	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	42	43	first strand
Strand 2	P	121	131	parallel
Strand 3	P	156	165	anti-parallel
Strand 4	P	171	179	anti-parallel

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There are 37 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	135	142	first strand
Strand 2	P	147	154	anti-parallel
Strand 3	P	182	193	anti-parallel
Strand 4	P	199	209	anti-parallel
Strand 5	R	135	142	anti-parallel
Strand 6	R	147	154	anti-parallel
Strand 7	R	182	193	anti-parallel
Strand 8	R	199	209	anti-parallel
Strand 9	Q	135	142	anti-parallel
Strand 10	Q	147	154	anti-parallel
Strand 11	Q	182	193	anti-parallel
Strand 12	Q	199	209	anti-parallel
Strand 13	O	135	142	anti-parallel
Strand 14	O	147	154	anti-parallel
Strand 15	O	182	193	anti-parallel
Strand 16	O	199	209	anti-parallel
Strand 17	N	135	142	anti-parallel
Strand 18	N	147	154	anti-parallel
Strand 19	N	182	193	anti-parallel
Strand 20	N	199	209	anti-parallel
Strand 21	M	135	142	anti-parallel
Strand 22	M	147	154	anti-parallel
Strand 23	M	182	193	anti-parallel
Strand 24	M	199	209	anti-parallel
Strand 25	L	135	142	anti-parallel
Strand 26	L	147	154	anti-parallel
Strand 27	L	182	193	anti-parallel
Strand 28	L	199	209	anti-parallel
Strand 29	K	135	142	anti-parallel
Strand 30	K	147	154	anti-parallel
Strand 31	K	182	193	anti-parallel
Strand 32	K	199	209	anti-parallel
Strand 33	J	135	142	anti-parallel
Strand 34	J	147	154	anti-parallel
Strand 35	J	182	193	anti-parallel
Strand 36	J	199	209	anti-parallel
Strand 37	P	135	142	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	43	first strand
Strand 2	J	121	131	parallel
Strand 3	J	34	38	parallel
Strand 4	J	78	82	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	43	first strand
Strand 2	J	121	131	parallel
Strand 3	J	156	165	anti-parallel
Strand 4	J	171	179	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	42	43	first strand
Strand 2	K	121	131	parallel
Strand 3	K	34	38	parallel
Strand 4	K	78	82	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	42	43	first strand
Strand 2	K	121	131	parallel
Strand 3	K	156	165	anti-parallel
Strand 4	K	171	179	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	43	first strand
Strand 2	L	121	131	parallel
Strand 3	L	34	38	parallel
Strand 4	L	78	82	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	43	first strand
Strand 2	L	121	131	parallel
Strand 3	L	156	165	anti-parallel
Strand 4	L	171	179	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	42	43	first strand
Strand 2	M	121	131	parallel
Strand 3	M	34	38	parallel
Strand 4	M	78	82	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	42	43	first strand
Strand 2	M	121	131	parallel
Strand 3	M	156	165	anti-parallel
Strand 4	M	171	179	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	42	43	first strand
Strand 2	N	121	131	parallel
Strand 3	N	34	38	parallel
Strand 4	N	78	82	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	42	43	first strand
Strand 2	N	121	131	parallel
Strand 3	N	156	165	anti-parallel
Strand 4	N	171	179	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	42	43	first strand
Strand 2	O	121	131	parallel
Strand 3	O	34	38	parallel
Strand 4	O	78	82	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	42	43	first strand
Strand 2	O	121	131	parallel
Strand 3	O	156	165	anti-parallel
Strand 4	O	171	179	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	42	43	first strand
Strand 2	Q	121	131	parallel
Strand 3	Q	34	38	parallel
Strand 4	Q	78	82	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	42	43	first strand
Strand 2	Q	121	131	parallel
Strand 3	Q	156	165	anti-parallel
Strand 4	Q	171	179	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	42	43	first strand
Strand 2	R	121	131	parallel
Strand 3	R	34	38	parallel
Strand 4	R	78	82	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	42	43	first strand
Strand 2	R	121	131	parallel
Strand 3	R	156	165	anti-parallel
Strand 4	R	171	179	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SI7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SI7