Analysis of interatomic Contacts of Structural Units in PDB entry:
6SI8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SI8 entry

There are 4 chains in PDB entry 6SI8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 7	ARG 431
B	ASN 7	ARG 431
D	ASN 7	ARG 431
C	ASN 7	ARG 431

There are 51 helices in PDB entry 6SI8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	16	Right-handed alpha
Helix 2	AA2	A	41	44	Right-handed 310
Helix 3	AA3	A	55	64	Right-handed alpha
Helix 4	AA4	A	77	88	Right-handed alpha
Helix 5	AA5	A	92	96	Right-handed 310
Helix 6	AA6	A	127	132	Right-handed alpha
Helix 7	AA7	A	148	159	Right-handed alpha
Helix 8	AA8	A	173	175	Right-handed 310
Helix 9	AA9	A	220	232	Right-handed alpha
Helix 10	AB1	A	243	250	Right-handed alpha
Helix 11	AB2	A	279	292	Right-handed alpha
Helix 12	AB3	A	399	405	Right-handed alpha
Helix 13	AB4	A	418	424	Right-handed alpha
Helix 14	AB5	B	11	16	Right-handed alpha
Helix 15	AB6	B	41	44	Right-handed 310
Helix 16	AB7	B	55	64	Right-handed alpha
Helix 17	AB8	B	77	88	Right-handed alpha
Helix 18	AB9	B	92	96	Right-handed 310
Helix 19	AC1	B	128	132	Right-handed 310
Helix 20	AC2	B	148	159	Right-handed alpha
Helix 21	AC3	B	220	228	Right-handed alpha
Helix 22	AC4	B	243	250	Right-handed alpha
Helix 23	AC5	B	279	289	Right-handed alpha
Helix 24	AC6	B	399	404	Right-handed alpha
Helix 25	AC7	B	418	424	Right-handed alpha
Helix 26	AC8	D	11	16	Right-handed alpha
Helix 27	AC9	D	30	34	Right-handed 310
Helix 28	AD1	D	41	44	Right-handed 310
Helix 29	AD2	D	55	64	Right-handed alpha
Helix 30	AD3	D	77	88	Right-handed alpha
Helix 31	AD4	D	92	96	Right-handed 310
Helix 32	AD5	D	128	132	Right-handed 310
Helix 33	AD6	D	148	159	Right-handed alpha
Helix 34	AD7	D	173	175	Right-handed 310
Helix 35	AD8	D	220	232	Right-handed alpha
Helix 36	AD9	D	243	250	Right-handed alpha
Helix 37	AE1	D	280	289	Right-handed alpha
Helix 38	AE2	D	399	404	Right-handed alpha
Helix 39	AE3	D	418	424	Right-handed alpha
Helix 40	AE4	C	11	16	Right-handed alpha
Helix 41	AE5	C	41	44	Right-handed 310
Helix 42	AE6	C	55	63	Right-handed alpha
Helix 43	AE7	C	77	88	Right-handed alpha
Helix 44	AE8	C	92	96	Right-handed 310
Helix 45	AE9	C	128	132	Right-handed 310
Helix 46	AF1	C	151	158	Right-handed alpha
Helix 47	AF2	C	220	228	Right-handed alpha
Helix 48	AF3	C	239	251	Right-handed alpha
Helix 49	AF4	C	279	292	Right-handed alpha
Helix 50	AF5	C	399	404	Right-handed alpha
Helix 51	AF6	C	418	424	Right-handed alpha

There are 24 sheets in PDB entry 6SI8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	68	71	parallel
Strand 3	A	20	24	parallel
Strand 4	A	135	139	parallel
Strand 5	A	215	219	anti-parallel
Strand 6	A	163	167	anti-parallel
Strand 7	A	254	258	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	208	212	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	182	first strand
Strand 2	A	191	194	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	339	341	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	346	first strand
Strand 2	A	361	363	parallel
Strand 3	A	378	380	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	382	384	parallel
Strand 3	A	415	417	parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	68	71	parallel
Strand 3	B	20	24	parallel
Strand 4	B	135	139	parallel
Strand 5	B	215	219	anti-parallel
Strand 6	B	163	167	anti-parallel
Strand 7	B	254	258	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	208	212	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	182	first strand
Strand 2	B	191	194	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	339	341	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	346	first strand
Strand 2	B	361	363	parallel
Strand 3	B	378	380	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	367	first strand
Strand 2	B	382	384	parallel
Strand 3	B	415	417	parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	68	71	parallel
Strand 3	D	20	24	parallel
Strand 4	D	135	139	parallel
Strand 5	D	215	219	anti-parallel
Strand 6	D	163	167	anti-parallel
Strand 7	D	254	258	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	171	first strand
Strand 2	D	208	212	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	182	first strand
Strand 2	D	191	194	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	319	first strand
Strand 2	D	339	341	parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	346	first strand
Strand 2	D	361	363	parallel
Strand 3	D	378	380	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	367	first strand
Strand 2	D	382	384	parallel
Strand 3	D	415	417	parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	68	71	parallel
Strand 3	C	20	24	parallel
Strand 4	C	135	139	parallel
Strand 5	C	215	219	anti-parallel
Strand 6	C	163	167	anti-parallel
Strand 7	C	254	258	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	171	first strand
Strand 2	C	208	212	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	182	first strand
Strand 2	C	191	194	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	319	first strand
Strand 2	C	339	341	parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	346	first strand
Strand 2	C	361	363	parallel
Strand 3	C	378	380	parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	367	first strand
Strand 2	C	382	384	parallel
Strand 3	C	415	417	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SI8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SI8