Analysis of interatomic Contacts of Structural Units in PDB entry:
6SIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SIT entry

There are 2 chains in PDB entry 6SIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 129ASP 319
D
 VAL 100ILE 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6SIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
177 182Right-handed alpha
Helix 2
AA2
A
183 186Right-handed 310
Helix 3
AA3
A
226 230Right-handed 310
Helix 4
AA4
A
246 248Right-handed 310
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There are 7 sheets in PDB entry 6SIT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
132 134anti-parallel
Strand 3
A
154 163anti-parallel
Strand 4
A
166 175anti-parallel
Strand 5
A
310 315anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 197first strand
Strand 2
A
284 293anti-parallel
Strand 3
A
264 273anti-parallel
Strand 4
A
250 258anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 110first strand
Strand 2
D
134 135anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 120first strand
Strand 2
D
208 214parallel
Strand 3
D
185 193anti-parallel
Strand 4
D
148 155anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 131first strand
Strand 2
D
170 173anti-parallel
Strand 3
D
162 164anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
222 223first strand
Strand 2
D
240 247anti-parallel
Strand 3
D
282 287anti-parallel
Strand 4
D
272 277anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
229 233first strand
Strand 2
D
324 331parallel
Strand 3
D
301 307anti-parallel
Strand 4
D
259 265anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il