Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SJ2 entry

There are 2 chains in PDB entry 6SJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ARG 494
B
 THR -8ARG 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6SJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 48Right-handed alpha
Helix 2
AA2
A
50 56Right-handed alpha
Helix 3
AA3
A
79 83Right-handed 310
Helix 4
AA4
A
108 118Right-handed alpha
Helix 5
AA5
A
118 126Right-handed alpha
Helix 6
AA6
A
127 145Right-handed alpha
Helix 7
AA7
A
158 170Right-handed alpha
Helix 8
AA8
A
196 212Right-handed alpha
Helix 9
AA9
A
227 231Right-handed 310
Helix 10
AB1
A
232 247Right-handed alpha
Helix 11
AB2
A
259 269Right-handed alpha
Helix 12
AB3
A
271 279Right-handed alpha
Helix 13
AB4
A
295 306Right-handed alpha
Helix 14
AB5
A
316 320Right-handed 310
Helix 15
AB6
A
328 336Right-handed alpha
Helix 16
AB7
A
353 370Right-handed alpha
Helix 17
AB8
A
376 384Right-handed alpha
Helix 18
AB9
A
385 392Right-handed alpha
Helix 19
AC1
A
416 420Right-handed 310
Helix 20
AC2
A
424 433Right-handed alpha
Helix 21
AC3
A
434 436Right-handed 310
Helix 22
AC4
A
458 477Right-handed alpha
Helix 23
AC5
A
481 492Right-handed alpha
Helix 24
AC6
B
-8 -4Right-handed 310
Helix 25
AC7
B
39 48Right-handed alpha
Helix 26
AC8
B
50 56Right-handed alpha
Helix 27
AC9
B
79 83Right-handed 310
Helix 28
AD1
B
108 118Right-handed alpha
Helix 29
AD2
B
118 126Right-handed alpha
Helix 30
AD3
B
127 145Right-handed alpha
Helix 31
AD4
B
158 170Right-handed alpha
Helix 32
AD5
B
196 212Right-handed alpha
Helix 33
AD6
B
227 231Right-handed 310
Helix 34
AD7
B
232 247Right-handed alpha
Helix 35
AD8
B
259 269Right-handed alpha
Helix 36
AD9
B
271 279Right-handed alpha
Helix 37
AE1
B
295 306Right-handed alpha
Helix 38
AE2
B
316 320Right-handed 310
Helix 39
AE3
B
328 336Right-handed alpha
Helix 40
AE4
B
353 370Right-handed alpha
Helix 41
AE5
B
376 384Right-handed alpha
Helix 42
AE6
B
385 392Right-handed alpha
Helix 43
AE7
B
416 420Right-handed 310
Helix 44
AE8
B
424 433Right-handed alpha
Helix 45
AE9
B
434 436Right-handed 310
Helix 46
AF1
B
458 477Right-handed alpha
Helix 47
AF2
B
481 492Right-handed alpha
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There are 10 sheets in PDB entry 6SJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 38first strand
Strand 2
A
24 29anti-parallel
Strand 3
A
3 7anti-parallel
Strand 4
A
58 61parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
10 12anti-parallel
Strand 3
A
65 69parallel
Strand 4
A
409 413anti-parallel
Strand 5
A
438 443anti-parallel
Strand 6
A
446 450anti-parallel
Strand 7
A
453 454anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 76first strand
Strand 2
A
147 152parallel
Strand 3
A
172 175parallel
Strand 4
A
219 221parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
192 193anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
250 254parallel
Strand 3
A
286 290parallel
Strand 4
A
308 311parallel
Strand 5
A
339 342parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 38first strand
Strand 2
B
24 29anti-parallel
Strand 3
B
3 7anti-parallel
Strand 4
B
58 61parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
10 12anti-parallel
Strand 3
B
65 69parallel
Strand 4
B
409 413anti-parallel
Strand 5
B
438 443anti-parallel
Strand 6
B
446 450anti-parallel
Strand 7
B
453 454anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 76first strand
Strand 2
B
147 152parallel
Strand 3
B
172 175parallel
Strand 4
B
219 221parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
192 193anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
250 254parallel
Strand 3
B
286 290parallel
Strand 4
B
308 311parallel
Strand 5
B
339 342parallel
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