Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SJ4 entry

There are 2 chains in PDB entry 6SJ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 494
B	ALA 0	ARG 494

There are 46 helices in PDB entry 6SJ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	47	Right-handed alpha
Helix 2	AA2	A	50	56	Right-handed alpha
Helix 3	AA3	A	80	83	Right-handed 310
Helix 4	AA4	A	108	118	Right-handed alpha
Helix 5	AA5	A	118	126	Right-handed alpha
Helix 6	AA6	A	127	145	Right-handed alpha
Helix 7	AA7	A	158	170	Right-handed alpha
Helix 8	AA8	A	196	213	Right-handed alpha
Helix 9	AA9	A	227	231	Right-handed 310
Helix 10	AB1	A	232	247	Right-handed alpha
Helix 11	AB2	A	259	269	Right-handed alpha
Helix 12	AB3	A	271	280	Right-handed alpha
Helix 13	AB4	A	295	305	Right-handed alpha
Helix 14	AB5	A	315	320	Right-handed alpha
Helix 15	AB6	A	328	336	Right-handed alpha
Helix 16	AB7	A	353	369	Right-handed alpha
Helix 17	AB8	A	376	384	Right-handed alpha
Helix 18	AB9	A	385	392	Right-handed alpha
Helix 19	AC1	A	416	420	Right-handed 310
Helix 20	AC2	A	424	433	Right-handed alpha
Helix 21	AC3	A	434	436	Right-handed 310
Helix 22	AC4	A	458	477	Right-handed alpha
Helix 23	AC5	A	481	491	Right-handed alpha
Helix 24	AC6	B	39	48	Right-handed alpha
Helix 25	AC7	B	50	56	Right-handed alpha
Helix 26	AC8	B	80	83	Right-handed 310
Helix 27	AC9	B	108	118	Right-handed alpha
Helix 28	AD1	B	118	125	Right-handed alpha
Helix 29	AD2	B	127	145	Right-handed alpha
Helix 30	AD3	B	158	170	Right-handed alpha
Helix 31	AD4	B	186	189	Right-handed 310
Helix 32	AD5	B	196	213	Right-handed alpha
Helix 33	AD6	B	227	231	Right-handed 310
Helix 34	AD7	B	232	247	Right-handed alpha
Helix 35	AD8	B	259	269	Right-handed alpha
Helix 36	AD9	B	271	279	Right-handed alpha
Helix 37	AE1	B	295	306	Right-handed alpha
Helix 38	AE2	B	315	320	Right-handed alpha
Helix 39	AE3	B	328	336	Right-handed alpha
Helix 40	AE4	B	353	370	Right-handed alpha
Helix 41	AE5	B	376	384	Right-handed alpha
Helix 42	AE6	B	385	392	Right-handed alpha
Helix 43	AE7	B	424	433	Right-handed alpha
Helix 44	AE8	B	434	436	Right-handed 310
Helix 45	AE9	B	458	477	Right-handed alpha
Helix 46	AF1	B	481	492	Right-handed alpha

There are 10 sheets in PDB entry 6SJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	24	29	anti-parallel
Strand 3	A	3	7	anti-parallel
Strand 4	A	58	61	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	10	12	anti-parallel
Strand 3	A	65	69	parallel
Strand 4	A	409	413	anti-parallel
Strand 5	A	438	443	anti-parallel
Strand 6	A	446	450	anti-parallel
Strand 7	A	453	454	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	172	175	parallel
Strand 3	A	147	152	parallel
Strand 4	A	71	78	parallel
Strand 5	A	345	347	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	192	193	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	254	first strand
Strand 2	A	286	290	parallel
Strand 3	A	308	311	parallel
Strand 4	A	339	342	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	38	first strand
Strand 2	B	24	29	anti-parallel
Strand 3	B	3	7	anti-parallel
Strand 4	B	58	61	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	10	12	anti-parallel
Strand 3	B	65	69	parallel
Strand 4	B	409	413	anti-parallel
Strand 5	B	438	443	anti-parallel
Strand 6	B	446	450	anti-parallel
Strand 7	B	453	454	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	172	175	parallel
Strand 3	B	147	152	parallel
Strand 4	B	71	78	parallel
Strand 5	B	345	347	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	185	first strand
Strand 2	B	190	193	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	250	254	parallel
Strand 3	B	286	290	parallel
Strand 4	B	308	311	parallel
Strand 5	B	339	342	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SJ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJ4