Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SJ6 entry

There are 26 chains in PDB entry 6SJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 3	U 2920
B	C 2	G 114
D	ALA 1	LYS 275
E	THR 2	LYS 217
F	ASN 3	VAL 205
M	MET 1	GLY 145
N	MET 1	LEU 122
O	MET 1	ILE 146
P	MET 1	LEU 137
Q	GLY 2	VAL 122
R	ASN 8	PHE 119
S	MET 1	ARG 103
T	PRO 2	LEU 117
U	PHE 2	ALA 102
V	MET 1	GLY 110
W	GLU 2	PHE 90
X	ILE 3	LYS 102
Y	GLY 11	MET 96
Z	SER 16	ALA 93
0	ALA 12	LYS 55
1	LYS 2	LYS 66
2	ALA 2	GLU 58
4	ALA 2	HIS 41
6	VAL 2	ALA 45
7	PRO 2	ALA 63
9	MET 1	TYR 112

There are 61 helices in PDB entry 6SJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	206	214	Right-handed alpha
Helix 2	AA2	E	70	78	Right-handed alpha
Helix 3	AA3	E	79	81	Right-handed 310
Helix 4	AA4	E	106	110	Right-handed 310
Helix 5	AA5	F	29	34	Right-handed alpha
Helix 6	AA6	F	34	42	Right-handed alpha
Helix 7	AA7	F	103	118	Right-handed alpha
Helix 8	AA8	F	135	140	Right-handed alpha
Helix 9	AA9	F	140	145	Right-handed alpha
Helix 10	AB1	F	194	199	Right-handed alpha
Helix 11	AB2	M	25	34	Right-handed alpha
Helix 12	AB3	M	91	95	Right-handed 310
Helix 13	AB4	M	97	105	Right-handed alpha
Helix 14	AB5	M	117	121	Right-handed 310
Helix 15	AB6	N	103	107	Right-handed 310
Helix 16	AB7	N	111	116	Right-handed alpha
Helix 17	AB8	O	80	83	Right-handed 310
Helix 18	AB9	O	92	99	Right-handed alpha
Helix 19	AC1	O	129	137	Right-handed alpha
Helix 20	AC2	P	44	56	Right-handed alpha
Helix 21	AC3	P	110	123	Right-handed alpha
Helix 22	AC4	Q	9	28	Right-handed alpha
Helix 23	AC5	Q	34	38	Right-handed alpha
Helix 24	AC6	Q	39	44	Right-handed alpha
Helix 25	AC7	Q	44	54	Right-handed alpha
Helix 26	AC8	Q	57	62	Right-handed alpha
Helix 27	AC9	Q	88	93	Right-handed alpha
Helix 28	AD1	R	58	62	Right-handed 310
Helix 29	AD2	R	69	74	Right-handed alpha
Helix 30	AD3	R	78	84	Right-handed alpha
Helix 31	AD4	R	104	115	Right-handed alpha
Helix 32	AD5	S	6	11	Right-handed alpha
Helix 33	AD6	T	8	14	Right-handed alpha
Helix 34	AD7	T	14	19	Right-handed alpha
Helix 35	AD8	T	25	30	Right-handed 310
Helix 36	AD9	T	31	50	Right-handed alpha
Helix 37	AE1	T	52	64	Right-handed alpha
Helix 38	AE2	T	67	72	Right-handed alpha
Helix 39	AE3	T	76	87	Right-handed alpha
Helix 40	AE4	T	94	100	Right-handed alpha
Helix 41	AE5	T	103	116	Right-handed alpha
Helix 42	AE6	V	13	22	Right-handed alpha
Helix 43	AE7	V	32	38	Right-handed alpha
Helix 44	AE8	V	43	52	Right-handed alpha
Helix 45	AE9	W	18	22	Right-handed 310
Helix 46	AF1	W	35	46	Right-handed alpha
Helix 47	AF2	Y	17	22	Right-handed alpha
Helix 48	AF3	Y	23	25	Right-handed 310
Helix 49	AF4	Y	45	54	Right-handed alpha
Helix 50	AF5	1	13	34	Right-handed alpha
Helix 51	AF6	1	41	54	Right-handed alpha
Helix 52	AF7	1	58	64	Right-handed alpha
Helix 53	AF8	2	23	27	Right-handed 310
Helix 54	AF9	2	42	48	Right-handed alpha
Helix 55	AG1	6	19	24	Right-handed alpha
Helix 56	AG2	6	25	39	Right-handed alpha
Helix 57	AG3	9	3	7	Right-handed 310
Helix 58	AG4	9	11	17	Right-handed alpha
Helix 59	AG5	9	46	62	Right-handed alpha
Helix 60	AG6	9	93	99	Right-handed alpha
Helix 61	AG7	9	99	104	Right-handed alpha

There are 36 sheets in PDB entry 6SJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	17	18	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	61	62	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	81	first strand
Strand 2	D	90	95	anti-parallel
Strand 3	D	99	104	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	127	130	parallel
Strand 3	D	188	191	anti-parallel
Strand 4	D	140	141	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	170	174	anti-parallel
Strand 3	D	180	184	anti-parallel
Strand 4	D	269	270	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	16	first strand
Strand 2	E	22	29	anti-parallel
Strand 3	E	194	198	anti-parallel
Strand 4	E	177	188	anti-parallel
Strand 5	E	115	121	anti-parallel
Strand 6	E	209	213	anti-parallel
Strand 7	E	4	16	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	49	52	anti-parallel
Strand 3	E	88	91	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	128	first strand
Strand 2	E	171	172	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	177	first strand
Strand 2	F	153	156	parallel
Strand 3	F	191	193	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	16	20	first strand
Strand 2	M	54	58	parallel
Strand 3	M	123	125	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	16	24	first strand
Strand 2	N	38	46	anti-parallel
Strand 3	N	58	64	anti-parallel
Strand 4	N	83	86	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	70	71	first strand
Strand 2	N	75	77	anti-parallel
Strand 3	S	70	77	anti-parallel
Strand 4	S	60	67	anti-parallel
Strand 5	S	45	53	anti-parallel
Strand 6	S	28	31	anti-parallel
Strand 7	S	85	88	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	76	78	first strand
Strand 2	O	110	112	parallel
Strand 3	O	127	128	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	32	34	first strand
Strand 2	P	103	106	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	41	43	first strand
Strand 2	P	90	96	anti-parallel
Strand 3	P	72	75	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	29	33	first strand
Strand 2	Q	115	121	anti-parallel
Strand 3	Q	101	108	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	30	31	first strand
Strand 2	R	44	45	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	34	35	first strand
Strand 2	R	40	41	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	14	first strand
Strand 2	U	3	7	anti-parallel
Strand 3	U	38	41	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	19	22	first strand
Strand 2	U	93	99	anti-parallel
Strand 3	U	59	62	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	71	77	first strand
Strand 2	U	82	88	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	2	10	first strand
Strand 2	V	101	108	anti-parallel
Strand 3	V	70	78	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	82	87	first strand
Strand 2	V	93	98	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	7	10	first strand
Strand 2	W	24	29	anti-parallel
Strand 3	W	77	82	anti-parallel
Strand 4	W	50	53	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	20	21	first strand
Strand 2	X	9	11	anti-parallel
Strand 3	X	68	69	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	41	42	first strand
Strand 2	X	58	59	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	82	85	first strand
Strand 2	X	90	93	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	72	73	first strand
Strand 2	Y	92	93	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	30	31	first strand
Strand 2	Z	46	47	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	38	39	first strand
Strand 2	Z	73	75	anti-parallel
Strand 3	Z	89	90	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	43	44	first strand
Strand 2	Z	68	69	anti-parallel
Strand 3	Z	59	60	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	53	55	first strand
Strand 2	Z	85	87	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	13	14	first strand
Strand 2	0	27	28	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	3	7	first strand
Strand 2	2	34	38	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	15	16	first strand
Strand 2	7	22	24	anti-parallel
Strand 3	7	48	49	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	78	81	first strand
Strand 2	9	86	89	anti-parallel
Strand 3	9	36	39	parallel
Strand 4	9	24	26	anti-parallel
Strand 5	9	109	110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJ6