Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SJ9 entry

There are 2 chains in PDB entry 6SJ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	SER 664
B	ALA 2	SER 664

There are 45 helices in PDB entry 6SJ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	18	Right-handed alpha
Helix 2	AA2	A	24	32	Right-handed alpha
Helix 3	AA3	A	38	56	Right-handed alpha
Helix 4	AA4	A	94	119	Right-handed alpha
Helix 5	AA5	A	146	160	Right-handed alpha
Helix 6	AA6	A	210	212	Right-handed 310
Helix 7	AA7	A	231	238	Right-handed alpha
Helix 8	AA8	A	256	262	Right-handed alpha
Helix 9	AA9	A	284	295	Right-handed alpha
Helix 10	AB1	A	304	324	Right-handed alpha
Helix 11	AB2	A	345	361	Right-handed alpha
Helix 12	AB3	A	367	375	Right-handed alpha
Helix 13	AB4	A	377	390	Right-handed alpha
Helix 14	AB5	A	426	442	Right-handed alpha
Helix 15	AB6	A	456	470	Right-handed alpha
Helix 16	AB7	A	472	477	Right-handed alpha
Helix 17	AB8	A	485	487	Right-handed 310
Helix 18	AB9	A	488	502	Right-handed alpha
Helix 19	AC1	A	598	603	Right-handed alpha
Helix 20	AC2	A	624	626	Right-handed 310
Helix 21	AC3	A	627	635	Right-handed alpha
Helix 22	AC4	A	644	660	Right-handed alpha
Helix 23	AC5	B	3	18	Right-handed alpha
Helix 24	AC6	B	24	31	Right-handed alpha
Helix 25	AC7	B	38	56	Right-handed alpha
Helix 26	AC8	B	94	119	Right-handed alpha
Helix 27	AC9	B	146	160	Right-handed alpha
Helix 28	AD1	B	210	212	Right-handed 310
Helix 29	AD2	B	231	238	Right-handed alpha
Helix 30	AD3	B	256	262	Right-handed alpha
Helix 31	AD4	B	284	295	Right-handed alpha
Helix 32	AD5	B	304	323	Right-handed alpha
Helix 33	AD6	B	345	361	Right-handed alpha
Helix 34	AD7	B	367	375	Right-handed alpha
Helix 35	AD8	B	377	390	Right-handed alpha
Helix 36	AD9	B	426	442	Right-handed alpha
Helix 37	AE1	B	456	470	Right-handed alpha
Helix 38	AE2	B	472	477	Right-handed alpha
Helix 39	AE3	B	485	502	Right-handed alpha
Helix 40	AE4	B	576	580	Right-handed 310
Helix 41	AE5	B	594	597	Right-handed 310
Helix 42	AE6	B	598	603	Right-handed alpha
Helix 43	AE7	B	624	626	Right-handed 310
Helix 44	AE8	B	627	635	Right-handed alpha
Helix 45	AE9	B	644	664	Right-handed alpha

There are 14 sheets in PDB entry 6SJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	78	80	anti-parallel
Strand 3	A	61	63	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	421	424	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	208	first strand
Strand 2	A	191	198	anti-parallel
Strand 3	A	175	188	anti-parallel
Strand 4	A	163	168	anti-parallel
Strand 5	A	217	218	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	208	first strand
Strand 2	A	191	198	anti-parallel
Strand 3	A	175	188	anti-parallel
Strand 4	A	404	407	anti-parallel
Strand 5	A	410	413	anti-parallel
Strand 6	A	365	366	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	268	first strand
Strand 2	A	275	282	anti-parallel
Strand 3	A	245	252	anti-parallel
Strand 4	A	299	303	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	550	first strand
Strand 2	A	533	540	anti-parallel
Strand 3	A	517	530	anti-parallel
Strand 4	A	503	510	anti-parallel
Strand 5	A	554	563	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	610	first strand
Strand 2	A	616	622	anti-parallel
Strand 3	A	586	592	anti-parallel
Strand 4	A	639	643	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	78	80	anti-parallel
Strand 3	B	61	63	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	422	424	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	208	first strand
Strand 2	B	191	198	anti-parallel
Strand 3	B	175	188	anti-parallel
Strand 4	B	163	168	anti-parallel
Strand 5	B	217	218	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	208	first strand
Strand 2	B	191	198	anti-parallel
Strand 3	B	175	188	anti-parallel
Strand 4	B	403	407	anti-parallel
Strand 5	B	410	414	anti-parallel
Strand 6	B	365	366	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	268	first strand
Strand 2	B	275	282	anti-parallel
Strand 3	B	245	252	anti-parallel
Strand 4	B	299	303	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	545	550	first strand
Strand 2	B	533	540	anti-parallel
Strand 3	B	517	530	anti-parallel
Strand 4	B	503	510	anti-parallel
Strand 5	B	554	563	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	610	first strand
Strand 2	B	616	622	anti-parallel
Strand 3	B	586	592	anti-parallel
Strand 4	B	639	643	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SJ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJ9