Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SJD entry

There are 3 chains in PDB entry 6SJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 185VAL 352
A
 ASP 184PRO 361
D
 U 3 A 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6SJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
196 204Right-handed alpha
Helix 2
AA2
B
211 224Right-handed alpha
Helix 3
AA3
B
236 239Right-handed 310
Helix 4
AA4
B
251 258Right-handed alpha
Helix 5
AA5
B
279 291Right-handed alpha
Helix 6
AA6
B
300 307Right-handed alpha
Helix 7
AA7
B
307 317Right-handed alpha
Helix 8
AA8
B
341 346Right-handed alpha
Helix 9
AA9
A
196 204Right-handed alpha
Helix 10
AB1
A
211 224Right-handed alpha
Helix 11
AB2
A
236 239Right-handed 310
Helix 12
AB3
A
251 258Right-handed alpha
Helix 13
AB4
A
279 291Right-handed alpha
Helix 14
AB5
A
300 307Right-handed alpha
Helix 15
AB6
A
307 317Right-handed alpha
Helix 16
AB7
A
341 347Right-handed alpha
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There are 8 sheets in PDB entry 6SJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 265first strand
Strand 2
B
229 234parallel
Strand 3
B
192 195parallel
Strand 4
B
293 295parallel
Strand 5
B
318 319parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
247 248parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
274 275anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 323first strand
Strand 2
B
328 329anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 265first strand
Strand 2
A
229 234parallel
Strand 3
A
192 195parallel
Strand 4
A
293 295parallel
Strand 5
A
318 319parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
247 248parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
274 275anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
328 329anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il