Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SJH entry

There are 3 chains in PDB entry 6SJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 146LEU 332
B
 THR 148LEU 332
C
 SER 144LEU 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6SJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
147 154Right-handed alpha
Helix 2
AA2
A
239 243Right-handed 310
Helix 3
AA3
B
149 154Right-handed alpha
Helix 4
AA4
B
239 243Right-handed 310
Helix 5
AA5
C
148 153Right-handed alpha
Helix 6
AA6
C
154 156Right-handed 310
Helix 7
AA7
C
239 243Right-handed 310
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There are 6 sheets in PDB entry 6SJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
178 181anti-parallel
Strand 3
A
326 329anti-parallel
Strand 4
A
212 220anti-parallel
Strand 5
A
278 284anti-parallel
Strand 6
A
289 296anti-parallel
Strand 7
A
299 307anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 208first strand
Strand 2
A
314 320anti-parallel
Strand 3
A
224 230anti-parallel
Strand 4
A
251 255anti-parallel
Strand 5
A
260 264anti-parallel
Strand 6
A
267 270anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 173first strand
Strand 2
B
178 181anti-parallel
Strand 3
B
326 329anti-parallel
Strand 4
B
212 220anti-parallel
Strand 5
B
278 284anti-parallel
Strand 6
B
289 296anti-parallel
Strand 7
B
299 307anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 208first strand
Strand 2
B
314 320anti-parallel
Strand 3
B
224 229anti-parallel
Strand 4
B
251 255anti-parallel
Strand 5
B
260 264anti-parallel
Strand 6
B
267 270anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 173first strand
Strand 2
C
178 181anti-parallel
Strand 3
C
326 329anti-parallel
Strand 4
C
212 220anti-parallel
Strand 5
C
278 284anti-parallel
Strand 6
C
289 296anti-parallel
Strand 7
C
299 307anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
201 208first strand
Strand 2
C
314 320anti-parallel
Strand 3
C
224 229anti-parallel
Strand 4
C
251 255anti-parallel
Strand 5
C
260 264anti-parallel
Strand 6
C
267 270anti-parallel
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