Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SJL entry

There are 6 chains in PDB entry 6SJL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 491	VAL 834
B	GLY 491	VAL 834
C	GLY 491	VAL 834
D	LYS 3	MET 539
E	LYS 3	MET 539
F	LYS 3	MET 539

There are 71 helices in PDB entry 6SJL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	567	571	Right-handed 310
Helix 2	AA2	A	577	601	Right-handed alpha
Helix 3	AA3	A	607	619	Right-handed alpha
Helix 4	AA4	A	620	622	Right-handed 310
Helix 5	AA5	B	567	571	Right-handed 310
Helix 6	AA6	B	577	601	Right-handed alpha
Helix 7	AA7	B	607	619	Right-handed alpha
Helix 8	AA8	B	620	622	Right-handed 310
Helix 9	AA9	C	567	571	Right-handed 310
Helix 10	AB1	C	577	601	Right-handed alpha
Helix 11	AB2	C	607	619	Right-handed alpha
Helix 12	AB3	C	620	622	Right-handed 310
Helix 13	AB4	D	52	58	Right-handed alpha
Helix 14	AB5	D	59	61	Right-handed 310
Helix 15	AB6	D	71	84	Right-handed alpha
Helix 16	AB7	D	100	109	Right-handed alpha
Helix 17	AB8	D	145	155	Right-handed alpha
Helix 18	AB9	D	155	179	Right-handed alpha
Helix 19	AC1	D	198	212	Right-handed alpha
Helix 20	AC2	D	214	226	Right-handed alpha
Helix 21	AC3	D	309	315	Right-handed alpha
Helix 22	AC4	D	345	348	Right-handed 310
Helix 23	AC5	D	349	365	Right-handed alpha
Helix 24	AC6	D	366	369	Right-handed 310
Helix 25	AC7	D	371	375	Right-handed 310
Helix 26	AC8	D	388	394	Right-handed alpha
Helix 27	AC9	D	416	431	Right-handed alpha
Helix 28	AD1	D	442	446	Right-handed 310
Helix 29	AD2	D	448	450	Right-handed 310
Helix 30	AD3	D	451	467	Right-handed alpha
Helix 31	AD4	D	475	483	Right-handed alpha
Helix 32	AD5	D	529	533	Right-handed 310
Helix 33	AD6	E	52	59	Right-handed alpha
Helix 34	AD7	E	71	86	Right-handed alpha
Helix 35	AD8	E	100	109	Right-handed alpha
Helix 36	AD9	E	142	144	Right-handed 310
Helix 37	AE1	E	145	155	Right-handed alpha
Helix 38	AE2	E	155	178	Right-handed alpha
Helix 39	AE3	E	198	212	Right-handed alpha
Helix 40	AE4	E	214	226	Right-handed alpha
Helix 41	AE5	E	309	315	Right-handed alpha
Helix 42	AE6	E	345	348	Right-handed 310
Helix 43	AE7	E	349	365	Right-handed alpha
Helix 44	AE8	E	366	369	Right-handed 310
Helix 45	AE9	E	371	375	Right-handed 310
Helix 46	AF1	E	388	394	Right-handed alpha
Helix 47	AF2	E	416	431	Right-handed alpha
Helix 48	AF3	E	442	446	Right-handed 310
Helix 49	AF4	E	448	450	Right-handed 310
Helix 50	AF5	E	451	467	Right-handed alpha
Helix 51	AF6	E	475	484	Right-handed alpha
Helix 52	AF7	E	529	533	Right-handed 310
Helix 53	AF8	F	52	59	Right-handed alpha
Helix 54	AF9	F	71	86	Right-handed alpha
Helix 55	AG1	F	100	109	Right-handed alpha
Helix 56	AG2	F	145	155	Right-handed alpha
Helix 57	AG3	F	155	179	Right-handed alpha
Helix 58	AG4	F	198	212	Right-handed alpha
Helix 59	AG5	F	214	226	Right-handed alpha
Helix 60	AG6	F	309	315	Right-handed alpha
Helix 61	AG7	F	345	348	Right-handed 310
Helix 62	AG8	F	349	365	Right-handed alpha
Helix 63	AG9	F	366	369	Right-handed 310
Helix 64	AH1	F	371	375	Right-handed 310
Helix 65	AH2	F	388	394	Right-handed alpha
Helix 66	AH3	F	416	431	Right-handed alpha
Helix 67	AH4	F	442	446	Right-handed 310
Helix 68	AH5	F	448	450	Right-handed 310
Helix 69	AH6	F	451	467	Right-handed alpha
Helix 70	AH7	F	475	484	Right-handed alpha
Helix 71	AH8	F	529	533	Right-handed 310

There are 28 sheets in PDB entry 6SJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 23 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	497	first strand
Strand 2	A	503	507	anti-parallel
Strand 3	A	514	519	anti-parallel
Strand 4	A	525	533	anti-parallel
Strand 5	A	539	548	anti-parallel
Strand 6	B	551	556	parallel
Strand 7	C	559	563	parallel
Strand 8	C	626	629	parallel
Strand 9	A	634	638	parallel
Strand 10	B	642	646	parallel
Strand 11	C	651	655	parallel
Strand 12	A	659	663	parallel
Strand 13	B	667	671	parallel
Strand 14	C	675	679	parallel
Strand 15	A	684	688	parallel
Strand 16	B	693	697	parallel
Strand 17	C	702	706	parallel
Strand 18	A	710	714	parallel
Strand 19	B	719	722	parallel
Strand 20	C	726	731	parallel
Strand 21	C	734	739	anti-parallel
Strand 22	C	742	746	anti-parallel
Strand 23	A	751	754	parallel

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There are 23 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	497	first strand
Strand 2	C	503	507	anti-parallel
Strand 3	C	514	519	anti-parallel
Strand 4	C	525	533	anti-parallel
Strand 5	C	539	548	anti-parallel
Strand 6	A	551	556	parallel
Strand 7	B	560	563	parallel
Strand 8	B	626	629	parallel
Strand 9	C	634	638	parallel
Strand 10	A	642	646	parallel
Strand 11	B	651	655	parallel
Strand 12	C	659	663	parallel
Strand 13	A	667	671	parallel
Strand 14	B	675	679	parallel
Strand 15	C	684	688	parallel
Strand 16	A	693	697	parallel
Strand 17	B	702	706	parallel
Strand 18	C	710	714	parallel
Strand 19	A	719	722	parallel
Strand 20	B	726	731	parallel
Strand 21	B	734	739	anti-parallel
Strand 22	B	742	746	anti-parallel
Strand 23	C	751	754	parallel

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There are 23 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	497	first strand
Strand 2	B	503	507	anti-parallel
Strand 3	B	514	519	anti-parallel
Strand 4	B	525	533	anti-parallel
Strand 5	B	539	548	anti-parallel
Strand 6	C	551	556	parallel
Strand 7	A	559	563	parallel
Strand 8	A	626	630	parallel
Strand 9	B	634	638	parallel
Strand 10	C	642	646	parallel
Strand 11	A	651	655	parallel
Strand 12	B	659	663	parallel
Strand 13	C	667	671	parallel
Strand 14	A	675	679	parallel
Strand 15	B	684	688	parallel
Strand 16	C	693	697	parallel
Strand 17	A	702	706	parallel
Strand 18	B	710	714	parallel
Strand 19	C	719	723	parallel
Strand 20	A	726	731	parallel
Strand 21	A	734	739	anti-parallel
Strand 22	A	742	746	anti-parallel
Strand 23	B	751	754	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	784	first strand
Strand 2	D	25	43	parallel
Strand 3	D	121	128	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	9	first strand
Strand 2	D	25	43	anti-parallel
Strand 3	D	184	195	parallel
Strand 4	D	237	243	parallel
Strand 5	D	278	284	parallel
Strand 6	D	303	306	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	809	first strand
Strand 2	A	795	799	anti-parallel
Strand 3	A	825	830	anti-parallel
Strand 4	D	13	15	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	783	784	first strand
Strand 2	E	25	43	parallel
Strand 3	E	121	128	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	9	first strand
Strand 2	E	25	43	anti-parallel
Strand 3	E	184	195	parallel
Strand 4	E	237	243	parallel
Strand 5	E	278	284	parallel
Strand 6	E	303	306	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	809	first strand
Strand 2	B	795	799	anti-parallel
Strand 3	B	825	830	anti-parallel
Strand 4	E	13	15	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	783	785	first strand
Strand 2	F	25	43	parallel
Strand 3	F	121	128	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	9	first strand
Strand 2	F	25	43	anti-parallel
Strand 3	F	184	195	parallel
Strand 4	F	237	243	parallel
Strand 5	F	278	284	parallel
Strand 6	F	303	306	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	795	799	first strand
Strand 2	C	805	809	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	826	827	first strand
Strand 2	F	13	14	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	295	first strand
Strand 2	D	536	537	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	331	first strand
Strand 2	D	398	409	anti-parallel
Strand 3	D	336	341	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	331	first strand
Strand 2	D	398	409	anti-parallel
Strand 3	D	376	386	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	495	497	first strand
Strand 2	D	521	523	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	500	502	first strand
Strand 2	D	509	511	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	294	295	first strand
Strand 2	E	536	537	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	331	first strand
Strand 2	E	398	409	anti-parallel
Strand 3	E	336	341	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	331	first strand
Strand 2	E	398	409	anti-parallel
Strand 3	E	376	386	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	497	first strand
Strand 2	E	521	523	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	500	502	first strand
Strand 2	E	509	511	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	294	295	first strand
Strand 2	F	536	537	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	328	331	first strand
Strand 2	F	398	409	anti-parallel
Strand 3	F	336	341	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	328	331	first strand
Strand 2	F	398	409	anti-parallel
Strand 3	F	376	386	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	495	497	first strand
Strand 2	F	521	523	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	500	502	first strand
Strand 2	F	509	511	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SJL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJL