Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SJS entry

There are 2 chains in PDB entry 6SJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PHE 306
B
 LYS 3PHE 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6SJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 69Right-handed alpha
Helix 2
AA2
A
80 95Right-handed alpha
Helix 3
AA3
A
105 117Right-handed alpha
Helix 4
AA4
A
119 125Right-handed alpha
Helix 5
AA5
A
136 147Right-handed alpha
Helix 6
AA6
A
162 164Right-handed 310
Helix 7
AA7
A
165 171Right-handed alpha
Helix 8
AA8
A
178 186Right-handed alpha
Helix 9
AA9
A
202 217Right-handed alpha
Helix 10
AB1
A
225 231Right-handed alpha
Helix 11
AB2
A
232 237Right-handed alpha
Helix 12
AB3
A
241 257Right-handed alpha
Helix 13
AB4
A
269 287Right-handed alpha
Helix 14
AB5
A
287 292Right-handed alpha
Helix 15
AB6
A
300 304Right-handed 310
Helix 16
AB7
B
50 69Right-handed alpha
Helix 17
AB8
B
80 95Right-handed alpha
Helix 18
AB9
B
105 117Right-handed alpha
Helix 19
AC1
B
119 125Right-handed alpha
Helix 20
AC2
B
136 147Right-handed alpha
Helix 21
AC3
B
162 172Right-handed alpha
Helix 22
AC4
B
178 186Right-handed alpha
Helix 23
AC5
B
202 217Right-handed alpha
Helix 24
AC6
B
225 231Right-handed alpha
Helix 25
AC7
B
232 237Right-handed alpha
Helix 26
AC8
B
241 257Right-handed alpha
Helix 27
AC9
B
269 287Right-handed alpha
Helix 28
AD1
B
287 292Right-handed alpha
Helix 29
AD2
B
300 304Right-handed 310
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There are 7 sheets in PDB entry 6SJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
16 19anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
150 154parallel
Strand 3
A
126 132parallel
Strand 4
A
99 102parallel
Strand 5
A
72 77parallel
Strand 6
A
28 33parallel
Strand 7
A
261 266parallel
Strand 8
A
222 223parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
48 49anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
176 177anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
16 19anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 194first strand
Strand 2
B
150 154parallel
Strand 3
B
126 131parallel
Strand 4
B
99 102parallel
Strand 5
B
72 77parallel
Strand 6
B
28 33parallel
Strand 7
B
261 266parallel
Strand 8
B
222 223parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
48 49anti-parallel
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