Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SJV entry

There is 1 chain in PDB entry 6SJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ARG 2394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6SJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 33Right-handed alpha
Helix 2
AA2
A
43 53Right-handed alpha
Helix 3
AA3
A
67 74Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
91 98Right-handed alpha
Helix 6
AA6
A
132 143Right-handed alpha
Helix 7
AA7
A
154 165Right-handed alpha
Helix 8
AA8
A
186 202Right-handed alpha
Helix 9
AA9
A
210 220Right-handed alpha
Helix 10
AB1
A
229 231Right-handed 310
Helix 11
AB2
A
232 239Right-handed alpha
Helix 12
AB3
A
273 284Right-handed alpha
Helix 13
AB4
A
287 298Right-handed alpha
Helix 14
AB5
A
305 307Right-handed 310
Helix 15
AB6
A
308 313Right-handed alpha
Helix 16
AB7
A
315 328Right-handed alpha
Helix 17
AB8
A
336 353Right-handed alpha
Helix 18
AB9
A
357 1003Right-handed alpha
Helix 19
AC1
A
1004 1006Right-handed 310
Helix 20
AC2
A
1013 1021Right-handed alpha
Helix 21
AC3
A
1040 1050Right-handed alpha
Helix 22
AC4
A
1065 1080Right-handed alpha
Helix 23
AC5
A
1086 1095Right-handed alpha
Helix 24
AC6
A
1113 1123Right-handed alpha
Helix 25
AC7
A
1138 1143Right-handed alpha
Helix 26
AC8
A
2381 2390Right-handed alpha
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There are 8 sheets in PDB entry 6SJV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
7 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
107 112anti-parallel
Strand 6
A
302 303anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
7 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
329 330parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
103 104anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
223 228parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
243 246anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
176 180anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
254 255anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1055 1057first strand
Strand 2
A
1060 1062anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1081 1085first strand
Strand 2
A
1127 1130anti-parallel
Strand 3
A
1133 1135anti-parallel
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