Analysis of interatomic Contacts of Structural Units in PDB entry:
6SKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SKR entry

There are 4 chains in PDB entry 6SKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 20PHE 69
A
 ILE 71ILE 264
B
 GLY 20PHE 69
B
 ILE 71ILE 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6SKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 35Right-handed alpha
Helix 2
AA2
A
55 60Right-handed alpha
Helix 3
AA3
A
65 68Right-handed 310
Helix 4
AA4
A
69 80Right-handed alpha
Helix 5
AA5
A
99 103Right-handed 310
Helix 6
AA6
A
107 114Right-handed alpha
Helix 7
AA7
A
116 139Right-handed alpha
Helix 8
AA8
A
152 157Right-handed alpha
Helix 9
AA9
A
163 175Right-handed alpha
Helix 10
AB1
A
181 192Right-handed alpha
Helix 11
AB2
A
243 247Right-handed 310
Helix 12
AB3
A
248 261Right-handed alpha
Helix 13
AB4
B
28 36Right-handed alpha
Helix 14
AB5
B
55 61Right-handed alpha
Helix 15
AB6
B
65 68Right-handed 310
Helix 16
AB7
B
69 80Right-handed alpha
Helix 17
AB8
B
99 103Right-handed 310
Helix 18
AB9
B
108 114Right-handed alpha
Helix 19
AC1
B
116 128Right-handed alpha
Helix 20
AC2
B
128 139Right-handed alpha
Helix 21
AC3
B
163 175Right-handed alpha
Helix 22
AC4
B
181 192Right-handed alpha
Helix 23
AC5
B
243 247Right-handed 310
Helix 24
AC6
B
248 261Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6SKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
50 53parallel
Strand 3
A
39 45anti-parallel
Strand 4
A
231 241anti-parallel
Strand 5
A
218 228anti-parallel
Strand 6
A
200 208anti-parallel
Strand 7
A
193 197anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
161 162anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
50 53parallel
Strand 3
B
39 45anti-parallel
Strand 4
B
231 241anti-parallel
Strand 5
B
218 228anti-parallel
Strand 6
B
200 208anti-parallel
Strand 7
B
193 197anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
161 162anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
106 107anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il