Analysis of interatomic Contacts of Structural Units in PDB entry:
6SKY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SKY entry

There are 2 chains in PDB entry 6SKY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1428	ALA 2944
B	GLY 1428	ALA 2944

There are150 helices in PDB entry 6SKY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1428	1442	Right-handed alpha
Helix 2	AA2	A	1447	1462	Right-handed alpha
Helix 3	AA3	A	1462	1467	Right-handed alpha
Helix 4	AA4	A	1469	1488	Right-handed alpha
Helix 5	AA5	A	1502	1522	Right-handed alpha
Helix 6	AA6	A	1529	1544	Right-handed alpha
Helix 7	AA7	A	1556	1570	Right-handed alpha
Helix 8	AA8	A	1577	1589	Right-handed alpha
Helix 9	AA9	A	1605	1620	Right-handed alpha
Helix 10	AB1	A	1626	1645	Right-handed alpha
Helix 11	AB2	A	1648	1652	Right-handed 310
Helix 12	AB3	A	1656	1664	Right-handed alpha
Helix 13	AB4	A	1669	1685	Right-handed alpha
Helix 14	AB5	A	1686	1707	Right-handed alpha
Helix 15	AB6	A	1709	1720	Right-handed alpha
Helix 16	AB7	A	1721	1727	Right-handed alpha
Helix 17	AB8	A	1755	1759	Right-handed 310
Helix 18	AB9	A	1761	1772	Right-handed alpha
Helix 19	AC1	A	1777	1782	Right-handed alpha
Helix 20	AC2	A	1782	1790	Right-handed alpha
Helix 21	AC3	A	1792	1809	Right-handed alpha
Helix 22	AC4	A	1814	1828	Right-handed alpha
Helix 23	AC5	A	1835	1850	Right-handed alpha
Helix 24	AC6	A	1859	1866	Right-handed 310
Helix 25	AC7	A	1870	1881	Right-handed alpha
Helix 26	AC8	A	1883	1899	Right-handed alpha
Helix 27	AC9	A	1915	1924	Right-handed alpha
Helix 28	AD1	A	1928	1933	Right-handed 310
Helix 29	AD2	A	1938	1949	Right-handed alpha
Helix 30	AD3	A	1952	1969	Right-handed alpha
Helix 31	AD4	A	1973	1989	Right-handed alpha
Helix 32	AD5	A	1990	2000	Right-handed alpha
Helix 33	AD6	A	2011	2022	Right-handed alpha
Helix 34	AD7	A	2034	2048	Right-handed alpha
Helix 35	AD8	A	2051	2071	Right-handed alpha
Helix 36	AD9	A	2076	2098	Right-handed alpha
Helix 37	AE1	A	2101	2120	Right-handed alpha
Helix 38	AE2	A	2123	2144	Right-handed alpha
Helix 39	AE3	A	2145	2148	Right-handed 310
Helix 40	AE4	A	2153	2175	Right-handed alpha
Helix 41	AE5	A	2177	2190	Right-handed alpha
Helix 42	AE6	A	2192	2197	Right-handed alpha
Helix 43	AE7	A	2202	2217	Right-handed alpha
Helix 44	AE8	A	2219	2233	Right-handed alpha
Helix 45	AE9	A	2244	2259	Right-handed alpha
Helix 46	AF1	A	2263	2271	Right-handed alpha
Helix 47	AF2	A	2271	2280	Right-handed alpha
Helix 48	AF3	A	2285	2304	Right-handed alpha
Helix 49	AF4	A	2305	2329	Right-handed alpha
Helix 50	AF5	A	2348	2388	Right-handed alpha
Helix 51	AF6	A	2393	2405	Right-handed alpha
Helix 52	AF7	A	2408	2419	Right-handed alpha
Helix 53	AF8	A	2420	2422	Right-handed 310
Helix 54	AF9	A	2423	2427	Right-handed 310
Helix 55	AG1	A	2430	2435	Right-handed alpha
Helix 56	AG2	A	2443	2460	Right-handed alpha
Helix 57	AG3	A	2460	2473	Right-handed alpha
Helix 58	AG4	A	2483	2498	Right-handed alpha
Helix 59	AG5	A	2506	2523	Right-handed alpha
Helix 60	AG6	A	2540	2553	Right-handed alpha
Helix 61	AG7	A	2615	2633	Right-handed alpha
Helix 62	AG8	A	2636	2642	Right-handed alpha
Helix 63	AG9	A	2670	2682	Right-handed alpha
Helix 64	AH1	A	2687	2698	Right-handed alpha
Helix 65	AH2	A	2702	2715	Right-handed alpha
Helix 66	AH3	A	2721	2727	Right-handed alpha
Helix 67	AH4	A	2731	2756	Right-handed alpha
Helix 68	AH5	A	2785	2790	Right-handed 310
Helix 69	AH6	A	2801	2807	Right-handed alpha
Helix 70	AH7	A	2815	2829	Right-handed alpha
Helix 71	AH8	A	2831	2844	Right-handed alpha
Helix 72	AH9	A	2853	2861	Right-handed alpha
Helix 73	AI1	A	2898	2909	Right-handed alpha
Helix 74	AI2	A	2915	2928	Right-handed alpha
Helix 75	AI3	A	2929	2934	Right-handed alpha
Helix 76	AI4	B	1429	1442	Right-handed alpha
Helix 77	AI5	B	1447	1462	Right-handed alpha
Helix 78	AI6	B	1462	1467	Right-handed alpha
Helix 79	AI7	B	1469	1488	Right-handed alpha
Helix 80	AI8	B	1502	1522	Right-handed alpha
Helix 81	AI9	B	1529	1544	Right-handed alpha
Helix 82	AJ1	B	1556	1570	Right-handed alpha
Helix 83	AJ2	B	1577	1589	Right-handed alpha
Helix 84	AJ3	B	1605	1620	Right-handed alpha
Helix 85	AJ4	B	1626	1645	Right-handed alpha
Helix 86	AJ5	B	1648	1652	Right-handed 310
Helix 87	AJ6	B	1656	1664	Right-handed alpha
Helix 88	AJ7	B	1669	1685	Right-handed alpha
Helix 89	AJ8	B	1686	1707	Right-handed alpha
Helix 90	AJ9	B	1709	1720	Right-handed alpha
Helix 91	AK1	B	1721	1727	Right-handed alpha
Helix 92	AK2	B	1755	1759	Right-handed 310
Helix 93	AK3	B	1761	1772	Right-handed alpha
Helix 94	AK4	B	1777	1782	Right-handed alpha
Helix 95	AK5	B	1782	1790	Right-handed alpha
Helix 96	AK6	B	1792	1809	Right-handed alpha
Helix 97	AK7	B	1814	1828	Right-handed alpha
Helix 98	AK8	B	1835	1850	Right-handed alpha
Helix 99	AK9	B	1859	1866	Right-handed 310
Helix 100	AL1	B	1870	1881	Right-handed alpha
Helix 101	AL2	B	1883	1899	Right-handed alpha
Helix 102	AL3	B	1915	1924	Right-handed alpha
Helix 103	AL4	B	1928	1933	Right-handed 310
Helix 104	AL5	B	1938	1949	Right-handed alpha
Helix 105	AL6	B	1952	1969	Right-handed alpha
Helix 106	AL7	B	1973	1989	Right-handed alpha
Helix 107	AL8	B	1990	2000	Right-handed alpha
Helix 108	AL9	B	2011	2022	Right-handed alpha
Helix 109	AM1	B	2034	2048	Right-handed alpha
Helix 110	AM2	B	2051	2071	Right-handed alpha
Helix 111	AM3	B	2076	2098	Right-handed alpha
Helix 112	AM4	B	2101	2120	Right-handed alpha
Helix 113	AM5	B	2123	2144	Right-handed alpha
Helix 114	AM6	B	2145	2148	Right-handed 310
Helix 115	AM7	B	2153	2175	Right-handed alpha
Helix 116	AM8	B	2177	2190	Right-handed alpha
Helix 117	AM9	B	2192	2197	Right-handed alpha
Helix 118	AN1	B	2202	2217	Right-handed alpha
Helix 119	AN2	B	2219	2233	Right-handed alpha
Helix 120	AN3	B	2244	2259	Right-handed alpha
Helix 121	AN4	B	2263	2271	Right-handed alpha
Helix 122	AN5	B	2271	2280	Right-handed alpha
Helix 123	AN6	B	2285	2304	Right-handed alpha
Helix 124	AN7	B	2305	2329	Right-handed alpha
Helix 125	AN8	B	2348	2388	Right-handed alpha
Helix 126	AN9	B	2393	2405	Right-handed alpha
Helix 127	AO1	B	2408	2419	Right-handed alpha
Helix 128	AO2	B	2420	2422	Right-handed 310
Helix 129	AO3	B	2423	2427	Right-handed 310
Helix 130	AO4	B	2430	2435	Right-handed alpha
Helix 131	AO5	B	2443	2460	Right-handed alpha
Helix 132	AO6	B	2460	2473	Right-handed alpha
Helix 133	AO7	B	2483	2498	Right-handed alpha
Helix 134	AO8	B	2506	2523	Right-handed alpha
Helix 135	AO9	B	2540	2553	Right-handed alpha
Helix 136	AP1	B	2615	2633	Right-handed alpha
Helix 137	AP2	B	2636	2642	Right-handed alpha
Helix 138	AP3	B	2670	2682	Right-handed alpha
Helix 139	AP4	B	2687	2698	Right-handed alpha
Helix 140	AP5	B	2702	2715	Right-handed alpha
Helix 141	AP6	B	2721	2727	Right-handed alpha
Helix 142	AP7	B	2731	2756	Right-handed alpha
Helix 143	AP8	B	2785	2790	Right-handed 310
Helix 144	AP9	B	2801	2807	Right-handed alpha
Helix 145	AQ1	B	2815	2829	Right-handed alpha
Helix 146	AQ2	B	2831	2844	Right-handed alpha
Helix 147	AQ3	B	2853	2861	Right-handed alpha
Helix 148	AQ4	B	2898	2909	Right-handed alpha
Helix 149	AQ5	B	2915	2928	Right-handed alpha
Helix 150	AQ6	B	2929	2934	Right-handed alpha

There are 6 sheets in PDB entry 6SKY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2534	2536	first strand
Strand 2	A	2582	2585	anti-parallel
Strand 3	A	2593	2599	anti-parallel
Strand 4	A	2576	2579	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2534	2536	first strand
Strand 2	A	2582	2585	anti-parallel
Strand 3	A	2593	2599	anti-parallel
Strand 4	A	2604	2611	anti-parallel
Strand 5	A	2658	2662	anti-parallel
Strand 6	A	2651	2655	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2667	2669	first strand
Strand 2	A	2766	2769	anti-parallel
Strand 3	A	2775	2777	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2534	2536	first strand
Strand 2	B	2582	2585	anti-parallel
Strand 3	B	2593	2599	anti-parallel
Strand 4	B	2576	2579	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2534	2536	first strand
Strand 2	B	2582	2585	anti-parallel
Strand 3	B	2593	2599	anti-parallel
Strand 4	B	2604	2611	anti-parallel
Strand 5	B	2658	2662	anti-parallel
Strand 6	B	2651	2655	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2667	2669	first strand
Strand 2	B	2766	2769	anti-parallel
Strand 3	B	2775	2777	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SKY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SKY