Analysis of interatomic Contacts of Structural Units in PDB entry:
6SKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SKZ entry

There is 1 chain in PDB entry 6SKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 14ALA 2944
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are145 helices in PDB entry 6SKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 22Right-handed alpha
Helix 2
AA2
A
26 40Right-handed alpha
Helix 3
AA3
A
56 73Right-handed alpha
Helix 4
AA4
A
86 102Right-handed alpha
Helix 5
AA5
A
110 125Right-handed alpha
Helix 6
AA6
A
136 150Right-handed alpha
Helix 7
AA7
A
150 157Right-handed alpha
Helix 8
AA8
A
162 179Right-handed alpha
Helix 9
AA9
A
218 233Right-handed alpha
Helix 10
AB1
A
244 255Right-handed alpha
Helix 11
AB2
A
262 279Right-handed alpha
Helix 12
AB3
A
283 295Right-handed alpha
Helix 13
AB4
A
313 335Right-handed alpha
Helix 14
AB5
A
342 360Right-handed alpha
Helix 15
AB6
A
398 416Right-handed alpha
Helix 16
AB7
A
448 454Right-handed alpha
Helix 17
AB8
A
457 473Right-handed alpha
Helix 18
AB9
A
478 493Right-handed alpha
Helix 19
AC1
A
497 512Right-handed alpha
Helix 20
AC2
A
519 521Right-handed 310
Helix 21
AC3
A
522 535Right-handed alpha
Helix 22
AC4
A
542 557Right-handed alpha
Helix 23
AC5
A
565 575Right-handed alpha
Helix 24
AC6
A
584 602Right-handed alpha
Helix 25
AC7
A
606 621Right-handed alpha
Helix 26
AC8
A
625 632Right-handed alpha
Helix 27
AC9
A
637 650Right-handed alpha
Helix 28
AD1
A
665 674Right-handed alpha
Helix 29
AD2
A
677 685Right-handed alpha
Helix 30
AD3
A
716 741Right-handed alpha
Helix 31
AD4
A
754 771Right-handed alpha
Helix 32
AD5
A
783 803Right-handed alpha
Helix 33
AD6
A
809 819Right-handed alpha
Helix 34
AD7
A
820 822Right-handed 310
Helix 35
AD8
A
826 833Right-handed alpha
Helix 36
AD9
A
837 858Right-handed alpha
Helix 37
AE1
A
895 898Right-handed 310
Helix 38
AE2
A
899 921Right-handed alpha
Helix 39
AE3
A
928 936Right-handed alpha
Helix 40
AE4
A
946 956Right-handed alpha
Helix 41
AE5
A
961 975Right-handed alpha
Helix 42
AE6
A
976 978Right-handed 310
Helix 43
AE7
A
984 998Right-handed alpha
Helix 44
AE8
A
998 1003Right-handed alpha
Helix 45
AE9
A
1009 1023Right-handed alpha
Helix 46
AF1
A
1031 1046Right-handed alpha
Helix 47
AF2
A
1051 1056Right-handed alpha
Helix 48
AF3
A
1060 1071Right-handed alpha
Helix 49
AF4
A
1073 1084Right-handed alpha
Helix 50
AF5
A
1086 1090Right-handed 310
Helix 51
AF6
A
1092 1094Right-handed 310
Helix 52
AF7
A
1095 1105Right-handed alpha
Helix 53
AF8
A
1113 1131Right-handed alpha
Helix 54
AF9
A
1134 1145Right-handed alpha
Helix 55
AG1
A
1161 1176Right-handed alpha
Helix 56
AG2
A
1182 1199Right-handed alpha
Helix 57
AG3
A
1200 1201Right-handed 310
Helix 58
AG4
A
1202 1206Right-handed 310
Helix 59
AG5
A
1215 1221Right-handed alpha
Helix 60
AG6
A
1223 1235Right-handed alpha
Helix 61
AG7
A
1236 1248Right-handed alpha
Helix 62
AG8
A
1250 1258Right-handed alpha
Helix 63
AG9
A
1258 1269Right-handed alpha
Helix 64
AH1
A
1283 1288Right-handed alpha
Helix 65
AH2
A
1294 1302Right-handed alpha
Helix 66
AH3
A
1302 1314Right-handed alpha
Helix 67
AH4
A
1318 1324Right-handed alpha
Helix 68
AH5
A
1332 1344Right-handed alpha
Helix 69
AH6
A
1359 1361Right-handed 310
Helix 70
AH7
A
1362 1372Right-handed alpha
Helix 71
AH8
A
1383 1398Right-handed alpha
Helix 72
AH9
A
1405 1422Right-handed alpha
Helix 73
AI1
A
1428 1443Right-handed alpha
Helix 74
AI2
A
1448 1462Right-handed alpha
Helix 75
AI3
A
1462 1467Right-handed alpha
Helix 76
AI4
A
1469 1490Right-handed alpha
Helix 77
AI5
A
1497 1522Right-handed alpha
Helix 78
AI6
A
1529 1544Right-handed alpha
Helix 79
AI7
A
1556 1570Right-handed alpha
Helix 80
AI8
A
1577 1589Right-handed alpha
Helix 81
AI9
A
1605 1620Right-handed alpha
Helix 82
AJ1
A
1626 1645Right-handed alpha
Helix 83
AJ2
A
1648 1652Right-handed 310
Helix 84
AJ3
A
1656 1664Right-handed alpha
Helix 85
AJ4
A
1669 1684Right-handed alpha
Helix 86
AJ5
A
1686 1707Right-handed alpha
Helix 87
AJ6
A
1709 1720Right-handed alpha
Helix 88
AJ7
A
1721 1727Right-handed alpha
Helix 89
AJ8
A
1761 1772Right-handed alpha
Helix 90
AJ9
A
1777 1782Right-handed alpha
Helix 91
AK1
A
1783 1788Right-handed alpha
Helix 92
AK2
A
1792 1809Right-handed alpha
Helix 93
AK3
A
1814 1828Right-handed alpha
Helix 94
AK4
A
1835 1850Right-handed alpha
Helix 95
AK5
A
1859 1866Right-handed 310
Helix 96
AK6
A
1870 1881Right-handed alpha
Helix 97
AK7
A
1883 1899Right-handed alpha
Helix 98
AK8
A
1915 1924Right-handed alpha
Helix 99
AK9
A
1928 1933Right-handed 310
Helix 100
AL1
A
1938 1949Right-handed alpha
Helix 101
AL2
A
1952 1969Right-handed alpha
Helix 102
AL3
A
1973 1989Right-handed alpha
Helix 103
AL4
A
1990 2001Right-handed alpha
Helix 104
AL5
A
2008 2022Right-handed alpha
Helix 105
AL6
A
2034 2048Right-handed alpha
Helix 106
AL7
A
2051 2072Right-handed alpha
Helix 107
AL8
A
2076 2098Right-handed alpha
Helix 108
AL9
A
2101 2120Right-handed alpha
Helix 109
AM1
A
2123 2144Right-handed alpha
Helix 110
AM2
A
2153 2175Right-handed alpha
Helix 111
AM3
A
2177 2190Right-handed alpha
Helix 112
AM4
A
2191 2197Right-handed alpha
Helix 113
AM5
A
2202 2217Right-handed alpha
Helix 114
AM6
A
2219 2233Right-handed alpha
Helix 115
AM7
A
2244 2259Right-handed alpha
Helix 116
AM8
A
2263 2271Right-handed alpha
Helix 117
AM9
A
2271 2279Right-handed alpha
Helix 118
AN1
A
2285 2304Right-handed alpha
Helix 119
AN2
A
2305 2330Right-handed alpha
Helix 120
AN3
A
2349 2386Right-handed alpha
Helix 121
AN4
A
2393 2405Right-handed alpha
Helix 122
AN5
A
2408 2419Right-handed alpha
Helix 123
AN6
A
2420 2422Right-handed 310
Helix 124
AN7
A
2423 2427Right-handed 310
Helix 125
AN8
A
2430 2435Right-handed alpha
Helix 126
AN9
A
2443 2460Right-handed alpha
Helix 127
AO1
A
2460 2473Right-handed alpha
Helix 128
AO2
A
2483 2498Right-handed alpha
Helix 129
AO3
A
2506 2523Right-handed alpha
Helix 130
AO4
A
2540 2553Right-handed alpha
Helix 131
AO5
A
2615 2633Right-handed alpha
Helix 132
AO6
A
2636 2642Right-handed alpha
Helix 133
AO7
A
2670 2682Right-handed alpha
Helix 134
AO8
A
2687 2698Right-handed alpha
Helix 135
AO9
A
2702 2715Right-handed alpha
Helix 136
AP1
A
2722 2729Right-handed alpha
Helix 137
AP2
A
2731 2756Right-handed alpha
Helix 138
AP3
A
2785 2790Right-handed 310
Helix 139
AP4
A
2801 2807Right-handed alpha
Helix 140
AP5
A
2815 2829Right-handed alpha
Helix 141
AP6
A
2831 2844Right-handed alpha
Helix 142
AP7
A
2853 2861Right-handed alpha
Helix 143
AP8
A
2898 2910Right-handed alpha
Helix 144
AP9
A
2915 2928Right-handed alpha
Helix 145
AQ1
A
2929 2934Right-handed alpha
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There are 4 sheets in PDB entry 6SKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
389 391anti-parallel
Strand 3
A
385 386anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2534 2536first strand
Strand 2
A
2582 2585anti-parallel
Strand 3
A
2593 2599anti-parallel
Strand 4
A
2576 2579anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2534 2536first strand
Strand 2
A
2582 2585anti-parallel
Strand 3
A
2593 2599anti-parallel
Strand 4
A
2604 2611anti-parallel
Strand 5
A
2658 2662anti-parallel
Strand 6
A
2651 2655anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2667 2669first strand
Strand 2
A
2766 2769anti-parallel
Strand 3
A
2775 2777anti-parallel
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