Analysis of interatomic Contacts of Structural Units in PDB entry:
6SL5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SL5 entry

There are 19 chains in PDB entry 6SL5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	GLY 751
B	THR 3	GLY 735
C	ALA 2	TYR 81
D	PRO 69	ILE 211
E	GLU 65	LYS 128
F	ASP 78	SER 240
J	MET 1	PHE 41
G	LEU 28	GLY 128
H	LYS 53	LEU 144
I	ALA 9	LYS 47
K	GLY 20	VAL 103
L	GLN 54	ARG 208
O	LEU 42	PHE 127
1	GLN 32	VAL 228
2	ASP 63	ILE 270
3	SER 58	GLY 285
4	ASP 123	PHE 333
5	LEU 47	LYS 248
6	LEU 47	THR 224

There are149 helices in PDB entry 6SL5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	31	Right-handed alpha
Helix 2	AA2	A	38	42	Right-handed 310
Helix 3	AA3	A	46	55	Right-handed alpha
Helix 4	AA4	A	58	62	Right-handed 310
Helix 5	AA5	A	65	98	Right-handed alpha
Helix 6	AA6	A	100	106	Right-handed alpha
Helix 7	AA7	A	143	151	Right-handed alpha
Helix 8	AA8	A	156	183	Right-handed alpha
Helix 9	AA9	A	187	192	Right-handed alpha
Helix 10	AB1	A	193	204	Right-handed alpha
Helix 11	AB2	A	204	220	Right-handed alpha
Helix 12	AB3	A	221	227	Right-handed alpha
Helix 13	AB4	A	239	246	Right-handed alpha
Helix 14	AB5	A	247	252	Right-handed alpha
Helix 15	AB6	A	254	259	Right-handed 310
Helix 16	AB7	A	261	266	Right-handed alpha
Helix 17	AB8	A	268	273	Right-handed 310
Helix 18	AB9	A	290	309	Right-handed alpha
Helix 19	AC1	A	321	328	Right-handed alpha
Helix 20	AC2	A	340	348	Right-handed alpha
Helix 21	AC3	A	348	374	Right-handed alpha
Helix 22	AC4	A	383	416	Right-handed alpha
Helix 23	AC5	A	425	433	Right-handed alpha
Helix 24	AC6	A	433	465	Right-handed alpha
Helix 25	AC7	A	467	471	Right-handed 310
Helix 26	AC8	A	481	493	Right-handed alpha
Helix 27	AC9	A	493	498	Right-handed alpha
Helix 28	AD1	A	529	556	Right-handed alpha
Helix 29	AD2	A	587	618	Right-handed alpha
Helix 30	AD3	A	641	649	Right-handed alpha
Helix 31	AD4	A	654	659	Right-handed alpha
Helix 32	AD5	A	665	688	Right-handed alpha
Helix 33	AD6	A	690	707	Right-handed alpha
Helix 34	AD7	A	719	751	Right-handed alpha
Helix 35	AD8	B	10	15	Right-handed alpha
Helix 36	AD9	B	19	26	Right-handed alpha
Helix 37	AE1	B	27	35	Right-handed 310
Helix 38	AE2	B	39	73	Right-handed alpha
Helix 39	AE3	B	74	80	Right-handed alpha
Helix 40	AE4	B	98	105	Right-handed alpha
Helix 41	AE5	B	120	129	Right-handed alpha
Helix 42	AE6	B	134	157	Right-handed alpha
Helix 43	AE7	B	165	170	Right-handed alpha
Helix 44	AE8	B	171	182	Right-handed alpha
Helix 45	AE9	B	185	198	Right-handed alpha
Helix 46	AF1	B	198	204	Right-handed alpha
Helix 47	AF2	B	230	236	Right-handed 310
Helix 48	AF3	B	270	289	Right-handed alpha
Helix 49	AF4	B	301	309	Right-handed alpha
Helix 50	AF5	B	322	330	Right-handed alpha
Helix 51	AF6	B	331	356	Right-handed alpha
Helix 52	AF7	B	365	398	Right-handed alpha
Helix 53	AF8	B	407	413	Right-handed alpha
Helix 54	AF9	B	415	447	Right-handed alpha
Helix 55	AG1	B	460	468	Right-handed alpha
Helix 56	AG2	B	484	489	Right-handed alpha
Helix 57	AG3	B	494	504	Right-handed alpha
Helix 58	AG4	B	514	541	Right-handed alpha
Helix 59	AG5	B	542	544	Right-handed 310
Helix 60	AG6	B	550	555	Right-handed 310
Helix 61	AG7	B	572	603	Right-handed alpha
Helix 62	AG8	B	606	614	Right-handed alpha
Helix 63	AG9	B	616	624	Right-handed alpha
Helix 64	AH1	B	632	634	Right-handed 310
Helix 65	AH2	B	644	667	Right-handed alpha
Helix 66	AH3	B	668	685	Right-handed alpha
Helix 67	AH4	B	702	734	Right-handed alpha
Helix 68	AH5	C	16	21	Right-handed alpha
Helix 69	AH6	C	44	48	Right-handed 310
Helix 70	AH7	C	52	58	Right-handed alpha
Helix 71	AH8	D	93	98	Right-handed alpha
Helix 72	AH9	D	134	149	Right-handed alpha
Helix 73	AI1	F	88	104	Right-handed alpha
Helix 74	AI2	F	113	134	Right-handed alpha
Helix 75	AI3	F	160	165	Right-handed alpha
Helix 76	AI4	F	168	191	Right-handed alpha
Helix 77	AI5	F	196	201	Right-handed alpha
Helix 78	AI6	F	203	212	Right-handed alpha
Helix 79	AI7	F	216	227	Right-handed alpha
Helix 80	AI8	J	2	8	Right-handed alpha
Helix 81	AI9	J	11	16	Right-handed alpha
Helix 82	AJ1	J	17	33	Right-handed alpha
Helix 83	AJ2	G	29	48	Right-handed alpha
Helix 84	AJ3	G	49	57	Right-handed alpha
Helix 85	AJ4	G	70	74	Right-handed 310
Helix 86	AJ5	G	96	101	Right-handed alpha
Helix 87	AJ6	G	103	108	Right-handed alpha
Helix 88	AJ7	G	109	114	Right-handed alpha
Helix 89	AJ8	G	115	119	Right-handed 310
Helix 90	AJ9	H	81	91	Right-handed alpha
Helix 91	AK1	H	95	106	Right-handed alpha
Helix 92	AK2	H	107	116	Right-handed alpha
Helix 93	AK3	H	122	127	Right-handed alpha
Helix 94	AK4	I	21	30	Right-handed alpha
Helix 95	AK5	I	31	46	Right-handed alpha
Helix 96	AK6	K	24	42	Right-handed alpha
Helix 97	AK7	K	75	101	Right-handed alpha
Helix 98	AK8	L	71	76	Right-handed alpha
Helix 99	AK9	L	76	86	Right-handed alpha
Helix 100	AL1	L	94	110	Right-handed alpha
Helix 101	AL2	L	111	117	Right-handed alpha
Helix 102	AL3	L	123	130	Right-handed alpha
Helix 103	AL4	L	131	153	Right-handed alpha
Helix 104	AL5	L	172	175	Right-handed 310
Helix 105	AL6	L	176	202	Right-handed alpha
Helix 106	AL7	O	48	50	Right-handed 310
Helix 107	AL8	O	51	64	Right-handed alpha
Helix 108	AL9	O	71	82	Right-handed alpha
Helix 109	AM1	O	97	121	Right-handed alpha
Helix 110	AM2	1	64	96	Right-handed alpha
Helix 111	AM3	1	102	104	Right-handed 310
Helix 112	AM4	1	105	110	Right-handed alpha
Helix 113	AM5	1	123	144	Right-handed alpha
Helix 114	AM6	1	155	159	Right-handed 310
Helix 115	AM7	1	166	198	Right-handed alpha
Helix 116	AM8	1	201	212	Right-handed alpha
Helix 117	AM9	1	217	221	Right-handed 310
Helix 118	AN1	2	95	130	Right-handed alpha
Helix 119	AN2	2	138	143	Right-handed alpha
Helix 120	AN3	2	152	175	Right-handed alpha
Helix 121	AN4	2	211	244	Right-handed alpha
Helix 122	AN5	2	246	257	Right-handed alpha
Helix 123	AN6	3	67	74	Right-handed alpha
Helix 124	AN7	3	105	127	Right-handed alpha
Helix 125	AN8	3	128	136	Right-handed alpha
Helix 126	AN9	3	165	190	Right-handed alpha
Helix 127	AO1	3	202	206	Right-handed 310
Helix 128	AO2	3	216	221	Right-handed alpha
Helix 129	AO3	3	228	260	Right-handed alpha
Helix 130	AO4	3	263	274	Right-handed alpha
Helix 131	AO5	3	279	284	Right-handed alpha
Helix 132	AO6	4	151	154	Right-handed 310
Helix 133	AO7	4	155	190	Right-handed alpha
Helix 134	AO8	4	199	205	Right-handed alpha
Helix 135	AO9	4	214	236	Right-handed alpha
Helix 136	AP1	4	275	300	Right-handed alpha
Helix 137	AP2	4	303	314	Right-handed alpha
Helix 138	AP3	5	72	76	Right-handed 310
Helix 139	AP4	5	79	110	Right-handed alpha
Helix 140	AP5	5	126	151	Right-handed alpha
Helix 141	AP6	5	169	192	Right-handed alpha
Helix 142	AP7	5	200	211	Right-handed alpha
Helix 143	AP8	5	225	247	Right-handed alpha
Helix 144	AP9	6	73	105	Right-handed alpha
Helix 145	AQ1	6	111	115	Right-handed 310
Helix 146	AQ2	6	121	146	Right-handed alpha
Helix 147	AQ3	6	166	191	Right-handed alpha
Helix 148	AQ4	6	193	204	Right-handed alpha
Helix 149	AQ5	6	209	216	Right-handed alpha

There are 13 sheets in PDB entry 6SL5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	138	139	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	623	first strand
Strand 2	A	626	629	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	114	116	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	637	first strand
Strand 2	B	640	641	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	187	188	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	132	first strand
Strand 2	D	99	107	anti-parallel
Strand 3	D	154	159	anti-parallel
Strand 4	D	164	168	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	120	122	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	119	first strand
Strand 2	E	102	105	anti-parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	73	76	anti-parallel
Strand 5	E	124	126	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	F	139	140	anti-parallel
Strand 3	F	146	147	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	51	first strand
Strand 2	K	59	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SL5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SL5