Analysis of interatomic Contacts of Structural Units in PDB entry:
6SLF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SLF entry

There are 4 chains in PDB entry 6SLF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	MET 398
B	GLU 3	MET 398
C	ASN 4	LYS 399
D	ASN 4	MET 398

There are 61 helices in PDB entry 6SLF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	29	Right-handed alpha
Helix 2	AA2	A	36	50	Right-handed alpha
Helix 3	AA3	A	96	100	Right-handed 310
Helix 4	AA4	A	106	124	Right-handed alpha
Helix 5	AA5	A	125	128	Right-handed 310
Helix 6	AA6	A	144	152	Right-handed alpha
Helix 7	AA7	A	153	158	Right-handed alpha
Helix 8	AA8	A	205	209	Right-handed 310
Helix 9	AA9	A	211	224	Right-handed alpha
Helix 10	AB1	A	224	230	Right-handed alpha
Helix 11	AB2	A	267	289	Right-handed alpha
Helix 12	AB3	A	309	325	Right-handed alpha
Helix 13	AB4	A	342	349	Right-handed alpha
Helix 14	AB5	A	362	366	Right-handed 310
Helix 15	AB6	A	379	398	Right-handed alpha
Helix 16	AB7	B	4	12	Right-handed alpha
Helix 17	AB8	B	15	28	Right-handed alpha
Helix 18	AB9	B	36	49	Right-handed alpha
Helix 19	AC1	B	96	100	Right-handed 310
Helix 20	AC2	B	106	124	Right-handed alpha
Helix 21	AC3	B	125	128	Right-handed 310
Helix 22	AC4	B	144	152	Right-handed alpha
Helix 23	AC5	B	153	158	Right-handed alpha
Helix 24	AC6	B	205	209	Right-handed 310
Helix 25	AC7	B	211	224	Right-handed alpha
Helix 26	AC8	B	224	230	Right-handed alpha
Helix 27	AC9	B	267	289	Right-handed alpha
Helix 28	AD1	B	309	325	Right-handed alpha
Helix 29	AD2	B	342	349	Right-handed alpha
Helix 30	AD3	B	362	366	Right-handed 310
Helix 31	AD4	B	379	398	Right-handed alpha
Helix 32	AD5	C	5	29	Right-handed alpha
Helix 33	AD6	C	36	49	Right-handed alpha
Helix 34	AD7	C	96	100	Right-handed 310
Helix 35	AD8	C	106	124	Right-handed alpha
Helix 36	AD9	C	125	128	Right-handed 310
Helix 37	AE1	C	144	152	Right-handed alpha
Helix 38	AE2	C	153	158	Right-handed alpha
Helix 39	AE3	C	205	209	Right-handed 310
Helix 40	AE4	C	211	230	Right-handed alpha
Helix 41	AE5	C	267	290	Right-handed alpha
Helix 42	AE6	C	309	325	Right-handed alpha
Helix 43	AE7	C	342	349	Right-handed alpha
Helix 44	AE8	C	362	366	Right-handed 310
Helix 45	AE9	C	379	398	Right-handed alpha
Helix 46	AF1	D	5	11	Right-handed alpha
Helix 47	AF2	D	12	14	Right-handed 310
Helix 48	AF3	D	15	28	Right-handed alpha
Helix 49	AF4	D	36	50	Right-handed alpha
Helix 50	AF5	D	96	100	Right-handed 310
Helix 51	AF6	D	106	123	Right-handed alpha
Helix 52	AF7	D	144	152	Right-handed alpha
Helix 53	AF8	D	153	158	Right-handed alpha
Helix 54	AF9	D	205	209	Right-handed 310
Helix 55	AG1	D	211	224	Right-handed alpha
Helix 56	AG2	D	224	230	Right-handed alpha
Helix 57	AG3	D	267	289	Right-handed alpha
Helix 58	AG4	D	309	325	Right-handed alpha
Helix 59	AG5	D	342	349	Right-handed alpha
Helix 60	AG6	D	362	366	Right-handed 310
Helix 61	AG7	D	379	398	Right-handed alpha

There are 14 sheets in PDB entry 6SLF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	62	68	anti-parallel
Strand 3	A	130	137	anti-parallel
Strand 4	A	73	79	parallel
Strand 5	A	163	170	parallel
Strand 6	A	352	358	parallel
Strand 7	A	178	180	anti-parallel
Strand 8	A	329	331	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	184	first strand
Strand 2	A	307	308	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	303	first strand
Strand 2	A	188	197	anti-parallel
Strand 3	A	256	265	anti-parallel
Strand 4	A	237	246	anti-parallel
Strand 5	B	237	246	anti-parallel
Strand 6	B	256	265	anti-parallel
Strand 7	B	188	197	anti-parallel
Strand 8	B	296	303	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	252	253	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	62	68	anti-parallel
Strand 3	B	130	137	anti-parallel
Strand 4	B	73	79	parallel
Strand 5	B	163	170	parallel
Strand 6	B	352	358	parallel
Strand 7	B	178	180	anti-parallel
Strand 8	B	329	331	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	184	first strand
Strand 2	B	307	308	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	252	253	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	62	68	anti-parallel
Strand 3	C	130	137	anti-parallel
Strand 4	C	73	79	parallel
Strand 5	C	163	170	parallel
Strand 6	C	352	358	parallel
Strand 7	C	178	180	anti-parallel
Strand 8	C	329	331	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	184	first strand
Strand 2	C	307	308	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	303	first strand
Strand 2	C	188	197	anti-parallel
Strand 3	C	256	265	anti-parallel
Strand 4	C	237	246	anti-parallel
Strand 5	D	237	246	anti-parallel
Strand 6	D	256	265	anti-parallel
Strand 7	D	188	197	anti-parallel
Strand 8	D	296	303	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	202	first strand
Strand 2	C	252	253	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	62	68	anti-parallel
Strand 3	D	130	137	anti-parallel
Strand 4	D	73	79	parallel
Strand 5	D	163	170	parallel
Strand 6	D	352	358	parallel
Strand 7	D	178	180	anti-parallel
Strand 8	D	329	331	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	184	first strand
Strand 2	D	307	308	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	252	253	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SLF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SLF