Analysis of interatomic Contacts of Structural Units in PDB entry:
6SLJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SLJ entry

There are 2 chains in PDB entry 6SLJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 115	PHE 1017
A	LEU 115	ASN 499

There are 85 helices in PDB entry 6SLJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	128	130	Right-handed 310
Helix 2	AA2	B	139	143	Right-handed 310
Helix 3	AA3	B	188	194	Right-handed alpha
Helix 4	AA4	B	196	198	Right-handed 310
Helix 5	AA5	B	218	221	Right-handed 310
Helix 6	AA6	B	253	257	Right-handed 310
Helix 7	AA7	B	261	272	Right-handed alpha
Helix 8	AA8	B	280	297	Right-handed alpha
Helix 9	AA9	B	320	326	Right-handed alpha
Helix 10	AB1	B	409	417	Right-handed alpha
Helix 11	AB2	B	445	453	Right-handed alpha
Helix 12	AB3	B	567	571	Right-handed 310
Helix 13	AB4	B	619	622	Right-handed 310
Helix 14	AB5	B	636	641	Right-handed alpha
Helix 15	AB6	B	737	741	Right-handed 310
Helix 16	AB7	B	849	853	Right-handed 310
Helix 17	AB8	B	893	900	Right-handed alpha
Helix 18	AB9	B	911	917	Right-handed 310
Helix 19	AC1	B	937	939	Right-handed 310
Helix 20	AC2	B	959	964	Right-handed 310
Helix 21	AC3	A	126	131	Right-handed alpha
Helix 22	AC4	A	139	143	Right-handed 310
Helix 23	AC5	A	188	194	Right-handed alpha
Helix 24	AC6	A	195	198	Right-handed 310
Helix 25	AC7	A	218	221	Right-handed 310
Helix 26	AC8	A	253	257	Right-handed 310
Helix 27	AC9	A	261	272	Right-handed alpha
Helix 28	AD1	A	280	297	Right-handed alpha
Helix 29	AD2	A	320	326	Right-handed alpha
Helix 30	AD3	A	409	417	Right-handed alpha
Helix 31	AD4	A	445	453	Right-handed alpha
Helix 32	AD5	A	567	571	Right-handed 310
Helix 33	AD6	A	619	622	Right-handed 310
Helix 34	AD7	A	635	641	Right-handed alpha
Helix 35	AD8	A	737	741	Right-handed 310
Helix 36	AD9	A	849	853	Right-handed 310
Helix 37	AE1	A	894	900	Right-handed alpha
Helix 38	AE2	A	911	917	Right-handed 310
Helix 39	AE3	A	937	939	Right-handed 310
Helix 40	AE4	A	959	963	Right-handed 310
Helix 41	AE5	C	37	54	Right-handed alpha
Helix 42	AE6	C	61	67	Right-handed alpha
Helix 43	AE7	C	81	86	Right-handed alpha
Helix 44	AE8	C	88	93	Right-handed alpha
Helix 45	AE9	C	105	133	Right-handed alpha
Helix 46	AF1	C	138	168	Right-handed alpha
Helix 47	AF2	C	179	183	Right-handed 310
Helix 48	AF3	C	201	218	Right-handed alpha
Helix 49	AF4	C	231	245	Right-handed alpha
Helix 50	AF5	C	248	260	Right-handed alpha
Helix 51	AF6	C	270	279	Right-handed alpha
Helix 52	AF7	C	324	329	Right-handed alpha
Helix 53	AF8	C	335	339	Right-handed 310
Helix 54	AF9	C	360	364	Right-handed 310
Helix 55	AG1	C	381	395	Right-handed alpha
Helix 56	AG2	C	397	412	Right-handed alpha
Helix 57	AG3	C	421	432	Right-handed alpha
Helix 58	AG4	C	437	445	Right-handed alpha
Helix 59	AG5	C	450	454	Right-handed 310
Helix 60	AG6	C	457	461	Right-handed 310
Helix 61	AG7	C	477	481	Right-handed 310
Helix 62	AG8	C	485	491	Right-handed alpha
Helix 63	AG9	D	37	54	Right-handed alpha
Helix 64	AH1	D	57	67	Right-handed alpha
Helix 65	AH2	D	81	86	Right-handed alpha
Helix 66	AH3	D	88	93	Right-handed alpha
Helix 67	AH4	D	105	133	Right-handed alpha
Helix 68	AH5	D	138	168	Right-handed alpha
Helix 69	AH6	D	179	183	Right-handed 310
Helix 70	AH7	D	201	220	Right-handed alpha
Helix 71	AH8	D	231	246	Right-handed alpha
Helix 72	AH9	D	248	258	Right-handed alpha
Helix 73	AI1	D	259	263	Right-handed 310
Helix 74	AI2	D	270	280	Right-handed alpha
Helix 75	AI3	D	324	329	Right-handed alpha
Helix 76	AI4	D	335	340	Right-handed 310
Helix 77	AI5	D	360	364	Right-handed 310
Helix 78	AI6	D	381	395	Right-handed alpha
Helix 79	AI7	D	397	412	Right-handed alpha
Helix 80	AI8	D	421	432	Right-handed alpha
Helix 81	AI9	D	437	446	Right-handed alpha
Helix 82	AJ1	D	450	454	Right-handed 310
Helix 83	AJ2	D	457	461	Right-handed 310
Helix 84	AJ3	D	477	481	Right-handed 310
Helix 85	AJ4	D	485	491	Right-handed alpha

There are 20 sheets in PDB entry 6SLJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	200	206	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	179	182	parallel

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There are 23 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	339	first strand
Strand 2	B	238	249	anti-parallel
Strand 3	B	1007	1016	anti-parallel
Strand 4	B	971	979	anti-parallel
Strand 5	B	946	957	anti-parallel
Strand 6	B	877	887	anti-parallel
Strand 7	B	864	874	anti-parallel
Strand 8	B	772	788	anti-parallel
Strand 9	B	751	764	anti-parallel
Strand 10	B	716	728	anti-parallel
Strand 11	B	698	711	anti-parallel
Strand 12	B	647	661	anti-parallel
Strand 13	B	624	634	anti-parallel
Strand 14	B	604	615	anti-parallel
Strand 15	B	581	600	anti-parallel
Strand 16	B	535	560	anti-parallel
Strand 17	B	507	530	anti-parallel
Strand 18	B	476	493	anti-parallel
Strand 19	B	455	470	anti-parallel
Strand 20	B	383	397	anti-parallel
Strand 21	B	365	380	anti-parallel
Strand 22	B	345	357	anti-parallel
Strand 23	B	331	341	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	394	first strand
Strand 2	B	459	463	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	495	first strand
Strand 2	B	508	516	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	675	first strand
Strand 2	B	685	687	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	731	735	first strand
Strand 2	B	744	748	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	795	797	first strand
Strand 2	B	804	806	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	946	948	first strand
Strand 2	B	983	985	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	200	206	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	179	182	parallel

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There are 23 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	338	first strand
Strand 2	A	239	250	anti-parallel
Strand 3	A	1006	1016	anti-parallel
Strand 4	A	971	979	anti-parallel
Strand 5	A	946	957	anti-parallel
Strand 6	A	877	887	anti-parallel
Strand 7	A	864	873	anti-parallel
Strand 8	A	774	788	anti-parallel
Strand 9	A	751	764	anti-parallel
Strand 10	A	716	728	anti-parallel
Strand 11	A	698	711	anti-parallel
Strand 12	A	647	661	anti-parallel
Strand 13	A	624	634	anti-parallel
Strand 14	A	604	615	anti-parallel
Strand 15	A	581	600	anti-parallel
Strand 16	A	535	554	anti-parallel
Strand 17	A	520	530	anti-parallel
Strand 18	A	476	493	anti-parallel
Strand 19	A	455	470	anti-parallel
Strand 20	A	383	397	anti-parallel
Strand 21	A	365	378	anti-parallel
Strand 22	A	345	357	anti-parallel
Strand 23	A	331	340	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	495	first strand
Strand 2	A	507	517	anti-parallel
Strand 3	A	549	560	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	675	first strand
Strand 2	A	685	687	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	731	735	first strand
Strand 2	A	744	748	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	795	798	first strand
Strand 2	A	803	806	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	946	948	first strand
Strand 2	A	983	985	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	818	821	first strand
Strand 2	A	828	830	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	73	first strand
Strand 2	C	321	323	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	311	first strand
Strand 2	C	314	317	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	73	first strand
Strand 2	D	321	323	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	311	first strand
Strand 2	D	314	317	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SLJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SLJ