Analysis of interatomic Contacts of Structural Units in PDB entry:
6SLU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SLU entry

There are 6 chains in PDB entry 6SLU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1GLY 220
B
 PRO 1GLY 220
C
 PRO 1GLY 220
D
 PRO 1GLY 220
E
 PRO 1GLY 220
F
 PRO 1GLY 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 6SLU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
35 44Right-handed alpha
Helix 3
AA3
A
48 58Right-handed alpha
Helix 4
AA4
A
62 84Right-handed alpha
Helix 5
AA5
A
100 106Right-handed alpha
Helix 6
AA6
A
110 119Right-handed alpha
Helix 7
AA7
A
125 145Right-handed alpha
Helix 8
AA8
A
160 175Right-handed alpha
Helix 9
AA9
A
178 193Right-handed alpha
Helix 10
AB1
A
195 206Right-handed alpha
Helix 11
AB2
A
210 220Right-handed alpha
Helix 12
AB3
B
16 31Right-handed alpha
Helix 13
AB4
B
35 44Right-handed alpha
Helix 14
AB5
B
48 58Right-handed alpha
Helix 15
AB6
B
62 84Right-handed alpha
Helix 16
AB7
B
100 105Right-handed alpha
Helix 17
AB8
B
110 119Right-handed alpha
Helix 18
AB9
B
125 145Right-handed alpha
Helix 19
AC1
B
160 175Right-handed alpha
Helix 20
AC2
B
178 191Right-handed alpha
Helix 21
AC3
B
195 206Right-handed alpha
Helix 22
AC4
B
210 218Right-handed alpha
Helix 23
AC5
C
16 31Right-handed alpha
Helix 24
AC6
C
35 44Right-handed alpha
Helix 25
AC7
C
48 58Right-handed alpha
Helix 26
AC8
C
62 84Right-handed alpha
Helix 27
AC9
C
110 119Right-handed alpha
Helix 28
AD1
C
125 145Right-handed alpha
Helix 29
AD2
C
160 174Right-handed alpha
Helix 30
AD3
C
178 186Right-handed alpha
Helix 31
AD4
C
188 193Right-handed alpha
Helix 32
AD5
C
195 204Right-handed alpha
Helix 33
AD6
C
210 219Right-handed alpha
Helix 34
AD7
D
16 31Right-handed alpha
Helix 35
AD8
D
35 44Right-handed alpha
Helix 36
AD9
D
48 58Right-handed alpha
Helix 37
AE1
D
62 84Right-handed alpha
Helix 38
AE2
D
100 106Right-handed alpha
Helix 39
AE3
D
110 119Right-handed alpha
Helix 40
AE4
D
125 146Right-handed alpha
Helix 41
AE5
D
160 173Right-handed alpha
Helix 42
AE6
D
178 193Right-handed alpha
Helix 43
AE7
D
195 206Right-handed alpha
Helix 44
AE8
D
210 220Right-handed alpha
Helix 45
AE9
E
16 31Right-handed alpha
Helix 46
AF1
E
35 44Right-handed alpha
Helix 47
AF2
E
48 59Right-handed alpha
Helix 48
AF3
E
62 84Right-handed alpha
Helix 49
AF4
E
100 105Right-handed alpha
Helix 50
AF5
E
110 119Right-handed alpha
Helix 51
AF6
E
125 145Right-handed alpha
Helix 52
AF7
E
160 175Right-handed alpha
Helix 53
AF8
E
178 191Right-handed alpha
Helix 54
AF9
E
195 206Right-handed alpha
Helix 55
AG1
E
210 218Right-handed alpha
Helix 56
AG2
F
16 31Right-handed alpha
Helix 57
AG3
F
35 44Right-handed alpha
Helix 58
AG4
F
48 58Right-handed alpha
Helix 59
AG5
F
62 84Right-handed alpha
Helix 60
AG6
F
110 119Right-handed alpha
Helix 61
AG7
F
125 145Right-handed alpha
Helix 62
AG8
F
160 174Right-handed alpha
Helix 63
AG9
F
178 186Right-handed alpha
Helix 64
AH1
F
188 193Right-handed alpha
Helix 65
AH2
F
195 206Right-handed alpha
Helix 66
AH3
F
210 219Right-handed alpha
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There are 4 sheets in PDB entry 6SLU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
10 12anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 3first strand
Strand 2
C
11 12anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 4first strand
Strand 2
D
10 12anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 3first strand
Strand 2
F
11 12anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il