Analysis of interatomic Contacts of Structural Units in PDB entry:
6SM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SM7 entry

There are 4 chains in PDB entry 6SM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 295
B
 ALA 2VAL 296
D
 ALA 2VAL 296
C
 ALA 2VAL 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 6SM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
33 43Right-handed alpha
Helix 3
AA3
A
50 56Right-handed alpha
Helix 4
AA4
A
67 77Right-handed alpha
Helix 5
AA5
A
80 85Right-handed 310
Helix 6
AA6
A
98 112Right-handed alpha
Helix 7
AA7
A
124 131Right-handed alpha
Helix 8
AA8
A
140 152Right-handed alpha
Helix 9
AA9
A
165 195Right-handed alpha
Helix 10
AB1
A
198 207Right-handed alpha
Helix 11
AB2
A
209 214Right-handed alpha
Helix 12
AB3
A
223 227Right-handed 310
Helix 13
AB4
A
234 252Right-handed alpha
Helix 14
AB5
A
256 272Right-handed alpha
Helix 15
AB6
A
278 280Right-handed 310
Helix 16
AB7
A
281 290Right-handed alpha
Helix 17
AB8
B
12 23Right-handed alpha
Helix 18
AB9
B
33 43Right-handed alpha
Helix 19
AC1
B
50 56Right-handed alpha
Helix 20
AC2
B
67 77Right-handed alpha
Helix 21
AC3
B
80 84Right-handed 310
Helix 22
AC4
B
98 112Right-handed alpha
Helix 23
AC5
B
124 131Right-handed alpha
Helix 24
AC6
B
140 152Right-handed alpha
Helix 25
AC7
B
165 195Right-handed alpha
Helix 26
AC8
B
198 207Right-handed alpha
Helix 27
AC9
B
209 214Right-handed alpha
Helix 28
AD1
B
223 227Right-handed 310
Helix 29
AD2
B
234 252Right-handed alpha
Helix 30
AD3
B
256 272Right-handed alpha
Helix 31
AD4
B
280 290Right-handed alpha
Helix 32
AD5
D
12 23Right-handed alpha
Helix 33
AD6
D
33 42Right-handed alpha
Helix 34
AD7
D
50 56Right-handed alpha
Helix 35
AD8
D
67 77Right-handed alpha
Helix 36
AD9
D
80 85Right-handed 310
Helix 37
AE1
D
98 112Right-handed alpha
Helix 38
AE2
D
124 131Right-handed alpha
Helix 39
AE3
D
140 152Right-handed alpha
Helix 40
AE4
D
165 195Right-handed alpha
Helix 41
AE5
D
198 207Right-handed alpha
Helix 42
AE6
D
209 214Right-handed alpha
Helix 43
AE7
D
223 227Right-handed 310
Helix 44
AE8
D
234 252Right-handed alpha
Helix 45
AE9
D
256 272Right-handed alpha
Helix 46
AF1
D
278 280Right-handed 310
Helix 47
AF2
D
281 290Right-handed alpha
Helix 48
AF3
C
12 23Right-handed alpha
Helix 49
AF4
C
33 43Right-handed alpha
Helix 50
AF5
C
50 56Right-handed alpha
Helix 51
AF6
C
67 77Right-handed alpha
Helix 52
AF7
C
80 84Right-handed 310
Helix 53
AF8
C
98 112Right-handed alpha
Helix 54
AF9
C
124 131Right-handed alpha
Helix 55
AG1
C
140 152Right-handed alpha
Helix 56
AG2
C
165 195Right-handed alpha
Helix 57
AG3
C
198 207Right-handed alpha
Helix 58
AG4
C
209 214Right-handed alpha
Helix 59
AG5
C
223 227Right-handed 310
Helix 60
AG6
C
234 252Right-handed alpha
Helix 61
AG7
C
256 272Right-handed alpha
Helix 62
AG8
C
278 280Right-handed 310
Helix 63
AG9
C
281 290Right-handed alpha
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There are 8 sheets in PDB entry 6SM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
26 30parallel
Strand 3
A
3 7parallel
Strand 4
A
60 63parallel
Strand 5
A
90 93parallel
Strand 6
A
115 118parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
155 160parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
26 30parallel
Strand 3
B
3 7parallel
Strand 4
B
60 63parallel
Strand 5
B
90 93parallel
Strand 6
B
115 118parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
133 137anti-parallel
Strand 3
B
155 160parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 47first strand
Strand 2
D
26 30parallel
Strand 3
D
3 7parallel
Strand 4
D
60 63parallel
Strand 5
D
90 93parallel
Strand 6
D
115 118parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
121 122first strand
Strand 2
D
133 137anti-parallel
Strand 3
D
155 160parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 47first strand
Strand 2
C
26 30parallel
Strand 3
C
3 7parallel
Strand 4
C
60 63parallel
Strand 5
C
90 93parallel
Strand 6
C
115 118parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 122first strand
Strand 2
C
133 137anti-parallel
Strand 3
C
155 160parallel
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