Analysis of interatomic Contacts of Structural Units in PDB entry:
6SMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SMC entry

There are 3 chains in PDB entry 6SMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 23	ARG 332
B	MET 23	ARG 332
C	MET 23	GLY 67

There are 8 helices in PDB entry 6SMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	85	Right-handed 310
Helix 2	AA2	A	226	231	Right-handed 310
Helix 3	AA3	B	81	85	Right-handed 310
Helix 4	AA4	B	226	231	Right-handed 310
Helix 5	AA5	C	81	85	Right-handed 310
Helix 6	AA6	C	226	230	Right-handed 310
Helix 7	AA7	D	81	85	Right-handed 310
Helix 8	AA8	D	226	231	Right-handed 310

There are 27 sheets in PDB entry 6SMC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	86	91	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	30	34	parallel
Strand 5	A	24	27	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	49	first strand
Strand 2	A	74	79	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	136	142	anti-parallel
Strand 3	A	186	193	anti-parallel
Strand 4	A	165	167	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	155	first strand
Strand 2	A	206	214	anti-parallel
Strand 3	A	217	225	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	179	first strand
Strand 2	A	182	184	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	249	252	anti-parallel
Strand 3	A	300	303	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	268	275	anti-parallel
Strand 3	A	309	316	anti-parallel
Strand 4	A	327	330	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	86	91	anti-parallel
Strand 3	B	99	105	anti-parallel
Strand 4	B	30	34	parallel
Strand 5	B	24	27	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	49	first strand
Strand 2	B	74	79	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	136	142	anti-parallel
Strand 3	B	186	193	anti-parallel
Strand 4	B	165	167	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	155	first strand
Strand 2	B	206	214	anti-parallel
Strand 3	B	217	225	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	182	184	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	249	252	anti-parallel
Strand 3	B	300	303	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	268	275	anti-parallel
Strand 3	B	309	316	anti-parallel
Strand 4	B	327	330	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	86	91	anti-parallel
Strand 3	C	99	105	anti-parallel
Strand 4	C	30	34	parallel
Strand 5	C	24	27	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	49	first strand
Strand 2	C	74	79	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	136	142	anti-parallel
Strand 3	C	186	193	anti-parallel
Strand 4	C	165	167	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	155	first strand
Strand 2	C	206	213	anti-parallel
Strand 3	C	218	225	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	243	first strand
Strand 2	C	249	252	anti-parallel
Strand 3	C	300	303	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	296	first strand
Strand 2	C	268	275	anti-parallel
Strand 3	C	309	316	anti-parallel
Strand 4	C	327	330	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	86	91	anti-parallel
Strand 3	D	99	105	anti-parallel
Strand 4	D	30	34	parallel
Strand 5	D	24	27	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	49	first strand
Strand 2	D	74	79	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	129	first strand
Strand 2	D	136	142	anti-parallel
Strand 3	D	186	193	anti-parallel
Strand 4	D	165	167	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	155	first strand
Strand 2	D	206	214	anti-parallel
Strand 3	D	217	225	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	179	first strand
Strand 2	D	182	184	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	243	first strand
Strand 2	D	249	252	anti-parallel
Strand 3	D	300	303	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	296	first strand
Strand 2	D	268	275	anti-parallel
Strand 3	D	309	316	anti-parallel
Strand 4	D	327	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SMC