Analysis of interatomic Contacts of Structural Units in PDB entry:
6SMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SMD entry

There are 4 chains in PDB entry 6SMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ASP 37
A
 THR 39ASP 80
B
 MET 1ASN 310
C
 SER 2ASN 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6SMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 17Right-handed alpha
Helix 2
AA2
A
37 53Right-handed alpha
Helix 3
AA3
A
57 62Right-handed alpha
Helix 4
AA4
A
66 80Right-handed alpha
Helix 5
AA5
B
19 26Right-handed alpha
Helix 6
AA6
B
27 41Right-handed alpha
Helix 7
AA7
B
43 51Right-handed alpha
Helix 8
AA8
B
52 57Right-handed alpha
Helix 9
AA9
B
58 81Right-handed alpha
Helix 10
AB1
B
93 102Right-handed alpha
Helix 11
AB2
B
106 125Right-handed alpha
Helix 12
AB3
B
139 151Right-handed alpha
Helix 13
AB4
B
173 187Right-handed alpha
Helix 14
AB5
B
202 204Right-handed 310
Helix 15
AB6
B
205 219Right-handed alpha
Helix 16
AB7
B
239 252Right-handed alpha
Helix 17
AB8
B
256 267Right-handed alpha
Helix 18
AB9
B
279 289Right-handed alpha
Helix 19
AC1
B
299 310Right-handed alpha
Helix 20
AC2
C
19 26Right-handed alpha
Helix 21
AC3
C
27 41Right-handed alpha
Helix 22
AC4
C
43 50Right-handed alpha
Helix 23
AC5
C
52 57Right-handed alpha
Helix 24
AC6
C
58 80Right-handed alpha
Helix 25
AC7
C
93 102Right-handed alpha
Helix 26
AC8
C
106 125Right-handed alpha
Helix 27
AC9
C
139 151Right-handed alpha
Helix 28
AD1
C
173 187Right-handed alpha
Helix 29
AD2
C
202 204Right-handed 310
Helix 30
AD3
C
205 219Right-handed alpha
Helix 31
AD4
C
239 251Right-handed alpha
Helix 32
AD5
C
256 267Right-handed alpha
Helix 33
AD6
C
279 289Right-handed alpha
Helix 34
AD7
C
299 310Right-handed alpha
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There are 4 sheets in PDB entry 6SMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
87 90parallel
Strand 3
B
4 8parallel
Strand 4
B
271 275parallel
Strand 5
B
293 297parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 163first strand
Strand 2
B
166 172anti-parallel
Strand 3
B
130 136anti-parallel
Strand 4
B
190 194anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 229first strand
Strand 2
C
87 90parallel
Strand 3
C
4 8parallel
Strand 4
C
271 275parallel
Strand 5
C
293 297parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 163first strand
Strand 2
C
166 172anti-parallel
Strand 3
C
130 136anti-parallel
Strand 4
C
190 194anti-parallel
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