Analysis of interatomic Contacts of Structural Units in PDB entry:
6SME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SME entry

There are 4 chains in PDB entry 6SME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 143
B
 SER -1ASP 143
C
 HIS 0ASP 143
D
 SER 2ASP 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6SME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
20 25Right-handed alpha
Helix 3
AA3
A
28 43Right-handed alpha
Helix 4
AA4
A
54 69Right-handed alpha
Helix 5
AA5
A
76 82Right-handed 310
Helix 6
AA6
A
83 91Right-handed alpha
Helix 7
AA7
A
104 108Right-handed 310
Helix 8
AA8
A
109 113Right-handed 310
Helix 9
AA9
A
117 121Right-handed 310
Helix 10
AB1
A
130 143Right-handed alpha
Helix 11
AB2
B
12 16Right-handed 310
Helix 12
AB3
B
20 25Right-handed alpha
Helix 13
AB4
B
28 43Right-handed alpha
Helix 14
AB5
B
54 69Right-handed alpha
Helix 15
AB6
B
76 82Right-handed 310
Helix 16
AB7
B
83 91Right-handed alpha
Helix 17
AB8
B
104 108Right-handed 310
Helix 18
AB9
B
109 113Right-handed 310
Helix 19
AC1
B
117 121Right-handed 310
Helix 20
AC2
B
130 143Right-handed alpha
Helix 21
AC3
C
12 16Right-handed 310
Helix 22
AC4
C
20 25Right-handed alpha
Helix 23
AC5
C
28 43Right-handed alpha
Helix 24
AC6
C
54 69Right-handed alpha
Helix 25
AC7
C
76 82Right-handed 310
Helix 26
AC8
C
83 91Right-handed alpha
Helix 27
AC9
C
104 108Right-handed 310
Helix 28
AD1
C
109 113Right-handed 310
Helix 29
AD2
C
117 121Right-handed 310
Helix 30
AD3
C
130 143Right-handed alpha
Helix 31
AD4
D
12 16Right-handed 310
Helix 32
AD5
D
28 43Right-handed alpha
Helix 33
AD6
D
54 69Right-handed alpha
Helix 34
AD7
D
76 82Right-handed 310
Helix 35
AD8
D
83 91Right-handed alpha
Helix 36
AD9
D
104 108Right-handed 310
Helix 37
AE1
D
109 113Right-handed 310
Helix 38
AE2
D
117 121Right-handed 310
Helix 39
AE3
D
130 142Right-handed alpha
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There are 3 sheets in PDB entry 6SME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 51first strand
Strand 2
A
3 9parallel
Strand 3
A
72 75parallel
Strand 4
A
97 101parallel
Strand 5
A
123 126parallel
Strand 6
D
123 126anti-parallel
Strand 7
D
97 101parallel
Strand 8
D
72 75parallel
Strand 9
D
4 9parallel
Strand 10
D
46 51parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 51first strand
Strand 2
B
3 9parallel
Strand 3
B
72 75parallel
Strand 4
B
97 101parallel
Strand 5
B
123 126parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 51first strand
Strand 2
C
3 9parallel
Strand 3
C
72 75parallel
Strand 4
C
97 101parallel
Strand 5
C
123 126parallel
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