Analysis of interatomic Contacts of Structural Units in PDB entry:
6SMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SMF entry

There are 4 chains in PDB entry 6SMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 146
B
 LYS 3LEU 146
C
 LYS 3LEU 146
D
 LYS 3LEU 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6SMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
22 27Right-handed alpha
Helix 3
AA3
A
30 46Right-handed alpha
Helix 4
AA4
A
56 70Right-handed alpha
Helix 5
AA5
A
79 85Right-handed 310
Helix 6
AA6
A
86 96Right-handed alpha
Helix 7
AA7
A
107 111Right-handed 310
Helix 8
AA8
A
112 116Right-handed 310
Helix 9
AA9
A
118 124Right-handed alpha
Helix 10
AB1
A
132 145Right-handed alpha
Helix 11
AB2
B
14 18Right-handed 310
Helix 12
AB3
B
22 27Right-handed alpha
Helix 13
AB4
B
30 46Right-handed alpha
Helix 14
AB5
B
56 70Right-handed alpha
Helix 15
AB6
B
79 85Right-handed 310
Helix 16
AB7
B
86 96Right-handed alpha
Helix 17
AB8
B
107 111Right-handed 310
Helix 18
AB9
B
112 116Right-handed 310
Helix 19
AC1
B
118 124Right-handed alpha
Helix 20
AC2
B
132 145Right-handed alpha
Helix 21
AC3
C
14 18Right-handed 310
Helix 22
AC4
C
22 27Right-handed alpha
Helix 23
AC5
C
30 46Right-handed alpha
Helix 24
AC6
C
56 70Right-handed alpha
Helix 25
AC7
C
79 85Right-handed 310
Helix 26
AC8
C
86 96Right-handed alpha
Helix 27
AC9
C
107 111Right-handed 310
Helix 28
AD1
C
112 116Right-handed 310
Helix 29
AD2
C
118 124Right-handed alpha
Helix 30
AD3
C
132 145Right-handed alpha
Helix 31
AD4
D
14 18Right-handed 310
Helix 32
AD5
D
22 27Right-handed alpha
Helix 33
AD6
D
30 46Right-handed alpha
Helix 34
AD7
D
56 70Right-handed alpha
Helix 35
AD8
D
79 85Right-handed 310
Helix 36
AD9
D
86 96Right-handed alpha
Helix 37
AE1
D
107 111Right-handed 310
Helix 38
AE2
D
112 116Right-handed 310
Helix 39
AE3
D
118 124Right-handed alpha
Helix 40
AE4
D
132 145Right-handed alpha
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There are 3 sheets in PDB entry 6SMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
6 11parallel
Strand 3
A
74 78parallel
Strand 4
A
100 104parallel
Strand 5
A
126 129parallel
Strand 6
D
126 129anti-parallel
Strand 7
D
100 104parallel
Strand 8
D
74 78parallel
Strand 9
D
6 11parallel
Strand 10
D
48 53parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
6 11parallel
Strand 3
B
74 78parallel
Strand 4
B
100 104parallel
Strand 5
B
126 129parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 53first strand
Strand 2
C
6 11parallel
Strand 3
C
74 78parallel
Strand 4
C
100 104parallel
Strand 5
C
126 129parallel
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