Analysis of interatomic Contacts of Structural Units in PDB entry:
6SML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SML entry

There are 2 chains in PDB entry 6SML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 20	ILE 501
B	GLN 103	ASN 894

There are 28 helices in PDB entry 6SML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	56	Right-handed alpha
Helix 2	AA2	A	61	67	Right-handed alpha
Helix 3	AA3	A	81	86	Right-handed alpha
Helix 4	AA4	A	105	133	Right-handed alpha
Helix 5	AA5	A	138	167	Right-handed alpha
Helix 6	AA6	A	201	218	Right-handed alpha
Helix 7	AA7	A	231	247	Right-handed alpha
Helix 8	AA8	A	248	257	Right-handed alpha
Helix 9	AA9	A	270	279	Right-handed alpha
Helix 10	AB1	A	324	330	Right-handed alpha
Helix 11	AB2	A	336	341	Right-handed alpha
Helix 12	AB3	A	381	396	Right-handed alpha
Helix 13	AB4	A	397	413	Right-handed alpha
Helix 14	AB5	A	422	432	Right-handed alpha
Helix 15	AB6	A	437	445	Right-handed alpha
Helix 16	AB7	A	477	481	Right-handed 310
Helix 17	AB8	B	138	143	Right-handed 310
Helix 18	AB9	B	188	193	Right-handed alpha
Helix 19	AC1	B	194	195	Right-handed 310
Helix 20	AC2	B	196	198	Right-handed 310
Helix 21	AC3	B	253	257	Right-handed 310
Helix 22	AC4	B	261	272	Right-handed alpha
Helix 23	AC5	B	320	326	Right-handed alpha
Helix 24	AC6	B	411	417	Right-handed alpha
Helix 25	AC7	B	445	453	Right-handed alpha
Helix 26	AC8	B	895	898	Right-handed 310
Helix 27	AC9	B	911	915	Right-handed 310
Helix 28	AD1	B	937	939	Right-handed 310

There are 14 sheets in PDB entry 6SML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	B	672	675	anti-parallel
Strand 3	B	685	687	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	321	323	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	103	104	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	290	first strand
Strand 2	A	377	380	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	311	first strand
Strand 2	A	314	317	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	351	354	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	125	first strand
Strand 2	B	200	206	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	179	182	parallel
Strand 5	B	186	187	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	163	166	anti-parallel

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There are 24 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	983	985	first strand
Strand 2	B	946	957	anti-parallel
Strand 3	B	972	979	anti-parallel
Strand 4	B	1006	1015	anti-parallel
Strand 5	B	238	250	anti-parallel
Strand 6	B	329	341	anti-parallel
Strand 7	B	346	357	anti-parallel
Strand 8	B	365	380	anti-parallel
Strand 9	B	383	396	anti-parallel
Strand 10	B	455	470	anti-parallel
Strand 11	B	477	495	anti-parallel
Strand 12	B	507	529	anti-parallel
Strand 13	B	536	560	anti-parallel
Strand 14	B	581	599	anti-parallel
Strand 15	B	604	615	anti-parallel
Strand 16	B	624	635	anti-parallel
Strand 17	B	647	659	anti-parallel
Strand 18	B	700	711	anti-parallel
Strand 19	B	716	728	anti-parallel
Strand 20	B	751	765	anti-parallel
Strand 21	B	772	788	anti-parallel
Strand 22	B	864	873	anti-parallel
Strand 23	B	877	887	anti-parallel
Strand 24	B	946	957	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	434	first strand
Strand 2	B	443	444	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	731	732	first strand
Strand 2	B	747	748	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	795	796	first strand
Strand 2	B	803	806	anti-parallel
Strand 3	B	812	816	anti-parallel
Strand 4	B	853	859	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	830	831	first strand
Strand 2	B	844	845	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	941	943	first strand
Strand 2	B	890	893	anti-parallel
Strand 3	B	997	999	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SML

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SML