Analysis of interatomic Contacts of Structural Units in PDB entry:
6SMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SMP entry

There are 5 chains in PDB entry 6SMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 5	SER 76
B	ILE 2	ASP 426
C	ARG 2	ILE 371
D	PRO 5	SER 76
E	ILE 2	SER 414

There are165 helices in PDB entry 6SMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	17	Right-handed alpha
Helix 2	AA2	A	29	35	Right-handed alpha
Helix 3	AA3	A	37	52	Right-handed alpha
Helix 4	AA4	A	57	62	Right-handed alpha
Helix 5	AA5	A	66	76	Right-handed alpha
Helix 6	AA6	B	28	39	Right-handed alpha
Helix 7	AA7	B	47	52	Right-handed alpha
Helix 8	AA8	B	79	97	Right-handed alpha
Helix 9	AA9	B	104	106	Right-handed 310
Helix 10	AB1	B	118	130	Right-handed alpha
Helix 11	AB2	B	138	142	Right-handed 310
Helix 12	AB3	B	143	151	Right-handed 310
Helix 13	AB4	B	153	164	Right-handed alpha
Helix 14	AB5	B	174	176	Right-handed 310
Helix 15	AB6	B	177	192	Right-handed alpha
Helix 16	AB7	B	208	219	Right-handed alpha
Helix 17	AB8	B	228	233	Right-handed 310
Helix 18	AB9	B	257	263	Right-handed alpha
Helix 19	AC1	B	290	305	Right-handed alpha
Helix 20	AC2	B	307	309	Right-handed 310
Helix 21	AC3	B	321	337	Right-handed alpha
Helix 22	AC4	B	338	342	Right-handed 310
Helix 23	AC5	B	347	351	Right-handed 310
Helix 24	AC6	B	356	374	Right-handed alpha
Helix 25	AC7	C	19	33	Right-handed alpha
Helix 26	AC8	C	53	57	Right-handed 310
Helix 27	AC9	C	59	64	Right-handed alpha
Helix 28	AD1	C	67	85	Right-handed alpha
Helix 29	AD2	C	92	94	Right-handed 310
Helix 30	AD3	C	110	120	Right-handed alpha
Helix 31	AD4	C	121	125	Right-handed 310
Helix 32	AD5	C	128	134	Right-handed alpha
Helix 33	AD6	C	136	147	Right-handed alpha
Helix 34	AD7	C	160	175	Right-handed alpha
Helix 35	AD8	C	191	205	Right-handed alpha
Helix 36	AD9	C	230	237	Right-handed alpha
Helix 37	AE1	C	254	267	Right-handed alpha
Helix 38	AE2	C	285	297	Right-handed alpha
Helix 39	AE3	C	306	311	Right-handed alpha
Helix 40	AE4	C	315	330	Right-handed alpha
Helix 41	AE5	D	6	18	Right-handed alpha
Helix 42	AE6	D	37	52	Right-handed alpha
Helix 43	AE7	D	57	62	Right-handed alpha
Helix 44	AE8	D	66	75	Right-handed alpha
Helix 45	AE9	E	28	39	Right-handed alpha
Helix 46	AF1	E	47	52	Right-handed alpha
Helix 47	AF2	E	79	97	Right-handed alpha
Helix 48	AF3	E	104	106	Right-handed 310
Helix 49	AF4	E	118	130	Right-handed alpha
Helix 50	AF5	E	138	142	Right-handed 310
Helix 51	AF6	E	143	150	Right-handed 310
Helix 52	AF7	E	153	164	Right-handed alpha
Helix 53	AF8	E	174	176	Right-handed 310
Helix 54	AF9	E	177	192	Right-handed alpha
Helix 55	AG1	E	208	219	Right-handed alpha
Helix 56	AG2	E	228	233	Right-handed 310
Helix 57	AG3	E	257	263	Right-handed alpha
Helix 58	AG4	E	290	305	Right-handed alpha
Helix 59	AG5	E	307	309	Right-handed 310
Helix 60	AG6	E	321	337	Right-handed alpha
Helix 61	AG7	E	338	342	Right-handed 310
Helix 62	AG8	E	348	353	Right-handed alpha
Helix 63	AG9	E	356	374	Right-handed alpha
Helix 64	AH1	F	19	32	Right-handed alpha
Helix 65	AH2	F	59	64	Right-handed alpha
Helix 66	AH3	F	67	85	Right-handed alpha
Helix 67	AH4	F	92	94	Right-handed 310
Helix 68	AH5	F	110	120	Right-handed alpha
Helix 69	AH6	F	121	125	Right-handed 310
Helix 70	AH7	F	128	134	Right-handed alpha
Helix 71	AH8	F	136	147	Right-handed alpha
Helix 72	AH9	F	160	175	Right-handed alpha
Helix 73	AI1	F	191	205	Right-handed alpha
Helix 74	AI2	F	230	237	Right-handed alpha
Helix 75	AI3	F	254	267	Right-handed alpha
Helix 76	AI4	F	268	270	Right-handed 310
Helix 77	AI5	F	285	297	Right-handed alpha
Helix 78	AI6	F	306	311	Right-handed alpha
Helix 79	AI7	F	315	330	Right-handed alpha
Helix 80	AI8	G	6	18	Right-handed alpha
Helix 81	AI9	G	29	35	Right-handed alpha
Helix 82	AJ1	G	37	53	Right-handed alpha
Helix 83	AJ2	G	57	62	Right-handed alpha
Helix 84	AJ3	G	66	76	Right-handed alpha
Helix 85	AJ4	H	28	39	Right-handed alpha
Helix 86	AJ5	H	47	52	Right-handed alpha
Helix 87	AJ6	H	79	96	Right-handed alpha
Helix 88	AJ7	H	118	130	Right-handed alpha
Helix 89	AJ8	H	138	142	Right-handed 310
Helix 90	AJ9	H	143	150	Right-handed 310
Helix 91	AK1	H	153	164	Right-handed alpha
Helix 92	AK2	H	174	176	Right-handed 310
Helix 93	AK3	H	177	192	Right-handed alpha
Helix 94	AK4	H	208	219	Right-handed alpha
Helix 95	AK5	H	228	233	Right-handed 310
Helix 96	AK6	H	257	264	Right-handed alpha
Helix 97	AK7	H	290	305	Right-handed alpha
Helix 98	AK8	H	307	309	Right-handed 310
Helix 99	AK9	H	321	337	Right-handed alpha
Helix 100	AL1	H	338	342	Right-handed 310
Helix 101	AL2	H	348	353	Right-handed alpha
Helix 102	AL3	H	356	374	Right-handed alpha
Helix 103	AL4	I	19	33	Right-handed alpha
Helix 104	AL5	I	53	57	Right-handed 310
Helix 105	AL6	I	59	64	Right-handed alpha
Helix 106	AL7	I	67	85	Right-handed alpha
Helix 107	AL8	I	87	91	Right-handed 310
Helix 108	AL9	I	92	94	Right-handed 310
Helix 109	AM1	I	110	120	Right-handed alpha
Helix 110	AM2	I	121	125	Right-handed 310
Helix 111	AM3	I	126	127	Right-handed 310
Helix 112	AM4	I	128	134	Right-handed alpha
Helix 113	AM5	I	136	147	Right-handed alpha
Helix 114	AM6	I	160	175	Right-handed alpha
Helix 115	AM7	I	191	205	Right-handed alpha
Helix 116	AM8	I	230	236	Right-handed alpha
Helix 117	AM9	I	254	267	Right-handed alpha
Helix 118	AN1	I	268	270	Right-handed 310
Helix 119	AN2	I	285	297	Right-handed alpha
Helix 120	AN3	I	306	311	Right-handed alpha
Helix 121	AN4	I	314	331	Right-handed alpha
Helix 122	AN5	J	6	18	Right-handed alpha
Helix 123	AN6	J	29	35	Right-handed alpha
Helix 124	AN7	J	37	53	Right-handed alpha
Helix 125	AN8	J	57	63	Right-handed alpha
Helix 126	AN9	J	66	76	Right-handed alpha
Helix 127	AO1	K	28	39	Right-handed alpha
Helix 128	AO2	K	47	52	Right-handed alpha
Helix 129	AO3	K	80	97	Right-handed alpha
Helix 130	AO4	K	99	103	Right-handed 310
Helix 131	AO5	K	104	106	Right-handed 310
Helix 132	AO6	K	118	130	Right-handed alpha
Helix 133	AO7	K	138	142	Right-handed 310
Helix 134	AO8	K	143	145	Right-handed 310
Helix 135	AO9	K	146	151	Right-handed alpha
Helix 136	AP1	K	153	164	Right-handed alpha
Helix 137	AP2	K	174	176	Right-handed 310
Helix 138	AP3	K	177	192	Right-handed alpha
Helix 139	AP4	K	208	219	Right-handed alpha
Helix 140	AP5	K	228	232	Right-handed 310
Helix 141	AP6	K	257	263	Right-handed alpha
Helix 142	AP7	K	290	305	Right-handed alpha
Helix 143	AP8	K	307	309	Right-handed 310
Helix 144	AP9	K	321	337	Right-handed alpha
Helix 145	AQ1	K	338	343	Right-handed alpha
Helix 146	AQ2	K	347	351	Right-handed 310
Helix 147	AQ3	K	356	374	Right-handed alpha
Helix 148	AQ4	L	19	33	Right-handed alpha
Helix 149	AQ5	L	53	57	Right-handed 310
Helix 150	AQ6	L	59	64	Right-handed alpha
Helix 151	AQ7	L	67	85	Right-handed alpha
Helix 152	AQ8	L	92	94	Right-handed 310
Helix 153	AQ9	L	110	120	Right-handed alpha
Helix 154	AR1	L	121	125	Right-handed 310
Helix 155	AR2	L	126	127	Right-handed 310
Helix 156	AR3	L	128	134	Right-handed alpha
Helix 157	AR4	L	137	147	Right-handed alpha
Helix 158	AR5	L	160	175	Right-handed alpha
Helix 159	AR6	L	191	205	Right-handed alpha
Helix 160	AR7	L	230	237	Right-handed alpha
Helix 161	AR8	L	254	267	Right-handed alpha
Helix 162	AR9	L	268	270	Right-handed 310
Helix 163	AS1	L	285	296	Right-handed alpha
Helix 164	AS2	L	306	311	Right-handed alpha
Helix 165	AS3	L	314	331	Right-handed alpha

There are 24 sheets in PDB entry 6SMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	14	23	anti-parallel
Strand 3	B	248	256	anti-parallel
Strand 4	B	197	204	anti-parallel
Strand 5	B	108	113	parallel
Strand 6	B	169	170	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	59	60	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	278	first strand
Strand 2	B	416	423	anti-parallel
Strand 3	B	405	411	anti-parallel
Strand 4	B	311	315	parallel
Strand 5	B	345	346	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	376	first strand
Strand 2	B	399	400	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	96	101	parallel
Strand 3	C	180	187	parallel
Strand 4	C	221	229	anti-parallel
Strand 5	C	5	13	anti-parallel
Strand 6	C	242	251	anti-parallel
Strand 7	C	362	369	anti-parallel
Strand 8	C	351	357	anti-parallel
Strand 9	C	276	278	parallel
Strand 10	C	302	304	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	218	219	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	27	first strand
Strand 2	E	14	23	anti-parallel
Strand 3	E	248	256	anti-parallel
Strand 4	E	197	204	anti-parallel
Strand 5	E	108	113	parallel
Strand 6	E	169	170	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	27	first strand
Strand 2	E	14	23	anti-parallel
Strand 3	E	269	278	anti-parallel
Strand 4	E	416	423	anti-parallel
Strand 5	E	405	411	anti-parallel
Strand 6	E	311	315	parallel
Strand 7	E	345	346	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	45	first strand
Strand 2	E	59	60	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	375	376	first strand
Strand 2	E	399	400	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	96	101	parallel
Strand 3	F	180	187	parallel
Strand 4	F	221	229	anti-parallel
Strand 5	F	5	13	anti-parallel
Strand 6	F	242	251	anti-parallel
Strand 7	F	362	369	anti-parallel
Strand 8	F	351	357	anti-parallel
Strand 9	F	276	278	parallel
Strand 10	F	302	304	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	218	219	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	207	first strand
Strand 2	F	211	212	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	170	first strand
Strand 2	H	108	113	parallel
Strand 3	H	197	204	parallel
Strand 4	H	248	256	anti-parallel
Strand 5	H	14	22	anti-parallel
Strand 6	H	269	278	anti-parallel
Strand 7	H	416	423	anti-parallel
Strand 8	H	405	412	anti-parallel
Strand 9	H	311	315	parallel
Strand 10	H	345	346	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	45	first strand
Strand 2	H	59	60	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	375	376	first strand
Strand 2	H	399	400	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	153	155	first strand
Strand 2	I	96	101	parallel
Strand 3	I	180	187	parallel
Strand 4	I	221	229	anti-parallel
Strand 5	I	5	13	anti-parallel
Strand 6	I	242	251	anti-parallel
Strand 7	I	362	369	anti-parallel
Strand 8	I	351	357	anti-parallel
Strand 9	I	276	278	parallel
Strand 10	I	302	304	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	47	first strand
Strand 2	I	218	219	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	206	207	first strand
Strand 2	I	211	212	anti-parallel

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There are 10 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	169	170	first strand
Strand 2	K	108	113	parallel
Strand 3	K	197	204	parallel
Strand 4	K	248	256	anti-parallel
Strand 5	K	14	22	anti-parallel
Strand 6	K	269	278	anti-parallel
Strand 7	K	416	423	anti-parallel
Strand 8	K	405	411	anti-parallel
Strand 9	K	311	315	parallel
Strand 10	K	345	346	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	45	first strand
Strand 2	K	59	60	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	375	376	first strand
Strand 2	K	399	400	anti-parallel

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There are 10 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	96	101	parallel
Strand 3	L	180	187	parallel
Strand 4	L	221	229	anti-parallel
Strand 5	L	5	13	anti-parallel
Strand 6	L	242	251	anti-parallel
Strand 7	L	362	369	anti-parallel
Strand 8	L	351	357	anti-parallel
Strand 9	L	276	279	parallel
Strand 10	L	302	305	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	47	first strand
Strand 2	L	218	219	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SMP